Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04153 ATGCATATGCATGGATTCAGAGCAAGAGTTGCTCTGCGCTCGATTTCAATTTGTAAATCAAAGTGGCATCATTACCATGTCCATAGAGGTGAAATCGAATCCTCTCGAAATCTCTTCACCACAACAACAGATCCTGAATTTAAGGAACCTGTAGCAGGATCGTCTATACAAACGCAAATTGTCAAGGCACTTTGCTCGGGTGAGAGAAAAAAGGCTTCAGACTTACTTTTGGATTTTGGTCACAGAAGCCAATCATTAACAGCTGATGATTTTGTTGATATTTTTAAATTCTGTGCACGGTCTCCTGATCCATTGTTTGTTATGGAGATTTGGAGATTTATGGAGTTAAAAGATGTTAGCATGAATAATATATGCTTCTCTCTTATGATGCAGGCCCTTTGTAAAGGGGGTTACTTGGAAGAGGCCTTTAATATGATGGATTTTCTTGGAGAAAGTCAATGTCTCTATCCAGTTCTCCCGCTGTACAATAGTCTCTTGAGATCCTGCACAAAAATGCAAAGTATAATGCAAGCAAGCAAATGTTTGGACTTGATGGAAAAGCAGATGGCAGGAAAGAATGAAGTTACATATATTGAGCTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTGCAGCCCATCTAATTTGGCAGGAGCATATTAAACACTACAGTATGAGTATCGTTGCTCTGCGTAAATTCATTTGGTCATTTACAAGGCTGGGGGATTTAAAATCTGCATATAAAACTCTACAACAAATGGTGTCATTAGCCATGAGGGGAAACGTTTCTATTGCTAGAGAAGTTTATGGGAAGTTGTATTTTACTAGATTGGACATCCCGGTACCTTCAAATAAAGAGCTAGACTCAATTATATTGGACTTGAAGAAGAACCAACAACTGGACTCTTGTGTACTTCCTTCTCTTATGTATTTACCAGATGCTATTTCTGCAAATATAGAGCAGCAAATGATTCATATGGGAAATAAAAAGGCTAAGAGTGCTGAAATAGATGAGCTGAATGAACAAAAACACTCACTGATTATGAAGTTCTTGAGGTGGTCTTTTAATGATGTAATACATGGGTGTGCTAAAGAAAAGAACTATATGCTTGCAAGGAAACTTATATTACAGATGCAAAATCTTGGTTTGAAGCCATCCAGCCATACATATGATGGCATTATTAGAGCAGTTGTTTCTCAAAGAAGTTTTGGGGATGGCATGGAAGTGTTAAAAAAAATGCAGCAGGAGAATTTGAAGCCATATGATTCAACTCTTGCAACACTTTCAGTCACTTGCAGCAAAGCGCTACAACTAGATTTAGCTGAGTCTTTGCTGAATCAGATTTCTGTATGTCTACATCCGCATCCATATAATGCTTTGCTAGAGTCGTGTGATGCACTGGTGAGCTCAAATATGAAACTTCAAAGCAAAAATCAACCTGAGCGTGCTGTACGAGTGTTTGGCAAGATGAAGCAGATAAAACTTTTACCTGATATCAGGACATATGAACTTCTATTTTCATTATTTGGTATTGTGAATGCCCCCTATGAAGACAGTAATATGCTGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAGGGACATGGCTCAAAATGGCATTCAGCACAGTTGTATTTCAATGAAAAACTTGTTGAAAGCCCTTGGAGAAGAAGGGATGATAAGAGAGCTGATCCAATATTTACATGTGGCAGAGAATCTTTTCATTTATAGAAACCCTTCTTTGGGGACAGATATATACAACATAGTGTTGCATTATCTTGTTGAAGCCAAAGAAAGTCACATGGCCGTTGAAATTTTCAAGAAGATGAAGTTGTGTGGCTCCCACCCTGATTCTGAAACTTACAATATAATGATTGACTGTTGTAGCATCCTAAAAAGTTATAAGTCTGCTTCTATGCTGCTTTCAATGATGATCCGTGAAGGCTTTTGTCCAGTGATTTGTACATATACTACTCTCATTAAGATTTTGTTGGAAGATGAGAACTTCAATGAAGCTCTGAATCTTTTGGAACGAATCAGATTGGATGGCATCCAACTTGATGTACTGTTGTTTAATACATTTCTTCGACAAGCATATGACAAGGAAAGGATCGATGTAATTGAGTTTATTGTGGAGTGTATGCACCGCGAGAAAATTCAGCCTAATCCAGCAACATGCGGCTTTGTCTTCTCTGCATATGTAAACTCTGGTTTTCACAATACAGCAATAGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGGCAACATACTTAGAGAGAAGAAAAAGTTTGTGGATCAATACATCCTTGCTGAAGATTTGGCTCCCGAGTCACATATACTTGAATTATTTGAAGATTTTGAAGATGAACTGGCAGTTGGATTGTTAAATTTAAGATGGTGTGCCGTCTCTGGGTTCCCTATCTGTGAATCAGCTGACCAAAGCCTATGGGCTAAAAGACTCAAACTACAATACGTTAAGAGACTAGCAGCTGATTCCTTAAGGGAAAAGCAATTGTGA 2541 0.3813 MHMHGFRARVALRSISICKSKWHHYHVHRGEIESSRNLFTTTTDPEFKEPVAGSSIQTQIVKALCSGERKKASDLLLDFGHRSQSLTADDFVDIFKFCARSPDPLFVMEIWRFMELKDVSMNNICFSLMMQALCKGGYLEEAFNMMDFLGESQCLYPVLPLYNSLLRSCTKMQSIMQASKCLDLMEKQMAGKNEVTYIELLKLAVLQKNLPAAHLIWQEHIKHYSMSIVALRKFIWSFTRLGDLKSAYKTLQQMVSLAMRGNVSIAREVYGKLYFTRLDIPVPSNKELDSIILDLKKNQQLDSCVLPSLMYLPDAISANIEQQMIHMGNKKAKSAEIDELNEQKHSLIMKFLRWSFNDVIHGCAKEKNYMLARKLILQMQNLGLKPSSHTYDGIIRAVVSQRSFGDGMEVLKKMQQENLKPYDSTLATLSVTCSKALQLDLAESLLNQISVCLHPHPYNALLESCDALVSSNMKLQSKNQPERAVRVFGKMKQIKLLPDIRTYELLFSLFGIVNAPYEDSNMLSQVDAAKRINAIERDMAQNGIQHSCISMKNLLKALGEEGMIRELIQYLHVAENLFIYRNPSLGTDIYNIVLHYLVEAKESHMAVEIFKKMKLCGSHPDSETYNIMIDCCSILKSYKSASMLLSMMIREGFCPVICTYTTLIKILLEDENFNEALNLLERIRLDGIQLDVLLFNTFLRQAYDKERIDVIEFIVECMHREKIQPNPATCGFVFSAYVNSGFHNTAIEALQVLSLRMMSEDGNILREKKKFVDQYILAEDLAPESHILELFEDFEDELAVGLLNLRWCAVSGFPICESADQSLWAKRLKLQYVKRLAADSLREKQL. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04153 846 Gene3D Tetratricopeptide repeat domain 456 581 IPR011990 GO:0005515
Seca8g04153 846 Gene3D Tetratricopeptide repeat domain 54 279 IPR011990 GO:0005515
Seca8g04153 846 Gene3D Tetratricopeptide repeat domain 582 778 IPR011990 GO:0005515
Seca8g04153 846 Pfam PPR repeat family 589 632 IPR002885 -
Seca8g04153 846 Coils Coil 330 350 - -
Seca8g04153 846 Pfam PPR repeat 125 148 IPR002885 -
Seca8g04153 846 Pfam Pentatricopeptide repeat domain 679 739 IPR002885 -
Seca8g04153 846 Pfam Pentatricopeptide repeat domain 376 421 IPR002885 -
Seca8g04153 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Seca8g04153 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Seca8g04153 846 Gene3D Tetratricopeptide repeat domain 337 439 IPR011990 GO:0005515
Seca8g04153 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Seca8g04153 846 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 829 - -
Seca8g04153 846 NCBIfam pentatricopeptide repeat 658 692 IPR002885 -
Seca8g04153 846 NCBIfam pentatricopeptide repeat 589 621 IPR002885 -
Seca8g04153 846 NCBIfam pentatricopeptide repeat 355 387 IPR002885 -
Seca8g04153 846 NCBIfam pentatricopeptide repeat 624 655 IPR002885 -
Seca8g04153 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04153 Seca-Chr8 118444311 118455124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04153 355 793 Glycosyltransferase AT1G05670 19.876 1.19e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04153 - - vun:114194590 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04153 8 118444311 118455124 Seca8g04153 8 118444311 118455124 ECH