Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04143 ATGTCTCTCCCTCCCATGATGAGACATGAATGGATATATCCACTAGTGGATTCAAAGTTGGAATTGGAAAAGTATCAAACGAGAAAGAAAAGTGAAGGTTCAGAACAGAGAGAGTGGAAGAGGATCATGGATCAAGGTAGGATCATCAACCCAAGAAGTGGCTTCTGTGCCTCCAATTCAATCTTCTACAGTAAGCGTAAGCCACTCCCTCTCCCTCCAAACCACTCCTTAGACGTCACCACCTTCATCTCCTCCCGCGCCCACCATGGCAAAACCGCCTTCGTCGACGCCGCCACCGGCCAACACTTCACCTACCAACAGCTCTGGACAGCCGTCAACGCCGTCGCCACCTCCCTCTCCGACATGGGAATCCGAAAGGGCAACGTCGTCCTCCTCCTCTCTCCCAACTCCATCTACTGCCCCGTCGTTTGCCTCGCCGTCATGTCCCTCGGCGCCATCATCACCACCACCAACCCTCTCAACACCACGCGCGAAATCGCCAAACAGATCGCCGATTCCAAACCCGTCCTCGCCTTCACAATCCCTCCACTCGTTCCCAAAATCATCGGCGCATCGCCTTCGCTCCCAATCATTCTTATGGACGCTGAATCAGCCACAGTCTCAGTCTCAGGGGCTAAAATTGTAACGACATTGAATGAAATGATGAAGAAGCAACCGAAAACGAGTCAAATGAGGGACCGAGTTAACCAGGATGACACTGCCACGTTGCTGTATTCCTCTGGCACGACGGGACCTAGCAAAGGCGTGATCTCTTCCCATGGGAACTTGATAGCGATGGTTCAAATCGTTTTGAATCGGTTCAGTAAGGAAGAGGAGCAGCAAACCTTCATCTGCACTGTGCCAATGTTCCATATATATGGTCTAGCAGTGTTTGCAACGGGGCTTCTGGCTTCAGGATCAACCGTTGTGGTTCTGTCCAAATTTGAGATGCATGACATGTTGTTATCGATTGAGAAGTTCCGCGCGTCGTTTCTGCCGCTTGTGCCGCCTATACTGGTGGCGTTGCTGAACAACGCGGATGCGATTAAGGGGAAGTATGACTTGAGGTCCTTGCATACGGTGCTTTCTGGTGGAGCTCCGTTAAGCAAGGAGGTGATAGAAGGGTTTGTGGAGAAGTATCCAAACGTCACCATTATGCAGGGTTATGGCTTGACGGAATCTTCTGGAGTTGGGGCATCGACTGATTCGTTGGAGGAGAGTCGGAGGTACGGCACGGCGGGGCTTTTGTCTCCTTCCACTGAGGCTATGATTGTTGACCCTGAGACTGCTCAACTACTTCCGGCTAACCGCGCCGGTGAGCTCTGGCTCCGAGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAGGAAGCAACCACATCAACCCTTAATTCAGAGGGATGGTTAAGAACAGGGGATGTTTGCTACTTTGATGATGATGGATTCTTATTTATTGTCGATCGGTTGAAAGAGCTCATTAAGTACAAGGGATATCAGGTCCCACCAGCAGAACTAGAGGCTTTGCTGCTGACTCATCCTGCTATTTCAGATGCTGCTGTCATACCGTATCCGGATAAGGAGGCTGGGCAGGTTCCAATGGCATATGTTGTAAGGAAGGCTGGAAGTAGCATATCAGAAAAACAAGTTATGGATTTTATTGCAGGACAGGTGGCTCCTTATAAAAGAATTCGAAAAGTGGCTTTCATATCTTCCATTCCCAAAAATCCATCTGGTAAAATTCTTAGGAAGGATCTCATCAAGCTTTCAACATCTAAACTTTGA 1782 0.4938 MSLPPMMRHEWIYPLVDSKLELEKYQTRKKSEGSEQREWKRIMDQGRIINPRSGFCASNSIFYSKRKPLPLPPNHSLDVTTFISSRAHHGKTAFVDAATGQHFTYQQLWTAVNAVATSLSDMGIRKGNVVLLLSPNSIYCPVVCLAVMSLGAIITTTNPLNTTREIAKQIADSKPVLAFTIPPLVPKIIGASPSLPIILMDAESATVSVSGAKIVTTLNEMMKKQPKTSQMRDRVNQDDTATLLYSSGTTGPSKGVISSHGNLIAMVQIVLNRFSKEEEQQTFICTVPMFHIYGLAVFATGLLASGSTVVVLSKFEMHDMLLSIEKFRASFLPLVPPILVALLNNADAIKGKYDLRSLHTVLSGGAPLSKEVIEGFVEKYPNVTIMQGYGLTESSGVGASTDSLEESRRYGTAGLLSPSTEAMIVDPETAQLLPANRAGELWLRGPTIMKGYFSNEEATTSTLNSEGWLRTGDVCYFDDDGFLFIVDRLKELIKYKGYQVPPAELEALLLTHPAISDAAVIPYPDKEAGQVPMAYVVRKAGSSISEKQVMDFIAGQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLSTSKL. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04143 593 Pfam AMP-binding enzyme 86 495 IPR000873 -
Seca8g04143 593 CDD 4CL 71 585 - -
Seca8g04143 593 FunFam Long-chain-fatty-acid--CoA ligase FadD 63 490 - -
Seca8g04143 593 FunFam 4-coumarate--CoA ligase 2 491 592 - -
Seca8g04143 593 SUPERFAMILY Acetyl-CoA synthetase-like 85 588 - -
Seca8g04143 593 ProSitePatterns Putative AMP-binding domain signature. 243 254 IPR020845 -
Seca8g04143 593 Gene3D - 59 490 IPR042099 -
Seca8g04143 593 Gene3D - 491 591 IPR045851 -
Seca8g04143 593 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 55 587 - -
Seca8g04143 593 Pfam AMP-binding enzyme C-terminal domain 504 579 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04143 Seca-Chr8 118317973 118321451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04143 48 593 Monolignol Biosynthesis Gene Families AT1G20500 65.814 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04143 K10526 - gmx:100811344 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04143 8 118317973 118321451 Seca8g04143 8 118317973 118321451 ECH