Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04141 ATGGGATTTGACAGTGAAAAGGATTTTGTTAATGTTGATCCTAGTTTGCTTACTGCTGAACTTGTTATGACTTTTCACTTCTCAAACCTTGAAATGGCTTATAAATTCTATAATTGGTATGGGAGGATATTAGGTTTTTCTGCTCGTAAGGGTAAAGTTAGGAAAAACAAGGATTTTGAAATTGTGGAGAAGACATTTTTTTGTCACAGGGAAGGAAAGAGGAAGAAAAAAGAAGAAGAGGAACATGAGGAACAAGAGGAAGAAGCTCAGACAACACGTGAATCTAGGCCAGAGACGAGAACTGGATGTCATGCAAAAATGAAGGTACGCCTTGATGGTATTAGTGGGAGATGGCGCGTGTCTAAGTTTGTAGGTGTACATAATCATGATCTATTAGATAAAATACATTCATCCATGTTACCTGCTCATAGAAAAATGACTGATGCTGACATTATGCAAATAAACAACTTACGCATGGTAGGTATAAGTACCCCCCACATTTATGGGACATTTGCAACTCAATCAGGAGGCTTTCAGCATGTGGGATTTTCTAAAAGAGATATTTATAATGAAATTGGTAGGCAAAGAGTGATGCAAGTTAGTGATGTTAAGGGTGCATTTCAGTACCTTCGTGATAGAGGGTCTGCTGAAGGTCCAATTTTTTGGAGCCACACACTTGATAGTGAAGGTAGGCTTATGCGTTTATTTTGGTGTGATGGACATAGTCAAATTGACTACAAGGTTTTCGGAGATGTTTTAGCATTTGATGCTACTTACAAAAAGAACAAGTATCACTTTCCTCTAGTGGTTTTTTCTGGTATAAACCATCACAACCAGACAACCATTTTTGCCAATGCTGTTATTGCTGATGAGACTGAAGAGACATATGTCTGGTTACTTGAACAGTTGATGGTTGCAATGAAAGGCAAGACACCGTTGTCAGTTATTACTGATGGAGATCTTGCAATGAAGAATGCCATCAAAAGAGTTTTTCCAAATGCACATCACAGGTTGTGTGCATGGCACCTTCTACGAAATGCTAATACCAATGTGAAGAATCTGAGGTTCCTTGCAGTGTTTAAGAAATGCATGCTGGGTGATTATGAGATTTATGAGTTTCAACATAGGTGGGTGAAAGTGGTAACAGAGTGTGGTCTTGAAGAAAACACGTGGGTGAAAGATTTGTATGAAAGAAGGAGCATGTGGGCCACTTGCTATATAAGGGGTACATTTTTTACAGGGATAAGGACAACATCTAGGTGTGAGGGGTTGCATGCACAACTTGGGAGGTTTGTCCATTCACGACATGGCTTAGTAGATTTCTTGCAGAATTTTCACCATTGCCTTGAATACTTTCGTTACAAGGAAATTGAGGCGGACTACGCCTCTTTGGTAGGCCAACCGGTTCTACAAACAAACTTGCATGCATTAGAGAGGTCTGCATCTAGATTGTTCAAAAGGGAGATCTTTAAGTTATTTCGTCCTGCACTTGCAAAAGGTAGCACTGTGAGGGTCAAAAGTTGTACCCAATTAATGTCCCAAACTATTTACACGGTGTCCAAATATGGTAGATCAAACAAGGAGTGGCGTGTTTCCCACTTAGCTCATCCATTGCAATTTAGGTGTTGTTGCAAAAGAATGGAGTCGTTTGGTCTTCCATGTGAACATATTGTAGGTGTAATGGTTCACCTCAACATGGATGAAATTCCTGGTTGTCTTGTTCTTGATAGATGGACAATGGCAGTGAAGGAAAATTTGTATCAGTTGTGTGACAAACGTACCTCAATGTGGGACTCTATTTTCATGGCTCGATGTGGTTGTTTGGATGCTTTATCACGAAAGGTGAATAGGTTGGCTTCAAGGTCTACCTTTAAATTTAATTCCATACGAGACTTACTTACCGAGCAACTTAAGAGGATGGAAATAACAGATGAAAGCAACAATGGTGGTGATGGTGAAAATTGCAATGAAGTCTCGCATGGATGTGTGAGGGACCCAAATAAAGTTGGTAGTAAGGGTTGTGCTGGGCCTTCATCAATGAGTGGTCCTCAAAGAAAGCGACGACAAAGGTGTGGCATATGCGGAGGAGTGGGGCATAATAGGAAGACATGTCCAATGAATAACAGTGTTGATCATGTGATGATGTCGCAACAGGGATCCAATTTGCATCATGTAAGCTATTTTTTTTTTCATTTTTTAACAACGTGTACTATTGGTTTAATTTGTTTGTATTTTCGTTGCTTTAAGGCTAAAACTGAATTCTGTGATTGCAGGATGATGCTGACAATAATTTTAATGAACCATTCGGATTGGATGAATATGATGCTTATGGTTTTTGAAGGAATGACTGGTATTGTACACCACTAA 2367 0.3946 MGFDSEKDFVNVDPSLLTAELVMTFHFSNLEMAYKFYNWYGRILGFSARKGKVRKNKDFEIVEKTFFCHREGKRKKKEEEEHEEQEEEAQTTRESRPETRTGCHAKMKVRLDGISGRWRVSKFVGVHNHDLLDKIHSSMLPAHRKMTDADIMQINNLRMVGISTPHIYGTFATQSGGFQHVGFSKRDIYNEIGRQRVMQVSDVKGAFQYLRDRGSAEGPIFWSHTLDSEGRLMRLFWCDGHSQIDYKVFGDVLAFDATYKKNKYHFPLVVFSGINHHNQTTIFANAVIADETEETYVWLLEQLMVAMKGKTPLSVITDGDLAMKNAIKRVFPNAHHRLCAWHLLRNANTNVKNLRFLAVFKKCMLGDYEIYEFQHRWVKVVTECGLEENTWVKDLYERRSMWATCYIRGTFFTGIRTTSRCEGLHAQLGRFVHSRHGLVDFLQNFHHCLEYFRYKEIEADYASLVGQPVLQTNLHALERSASRLFKREIFKLFRPALAKGSTVRVKSCTQLMSQTIYTVSKYGRSNKEWRVSHLAHPLQFRCCCKRMESFGLPCEHIVGVMVHLNMDEIPGCLVLDRWTMAVKENLYQLCDKRTSMWDSIFMARCGCLDALSRKVNRLASRSTFKFNSIRDLLTEQLKRMEITDESNNGGDGENCNEVSHGCVRDPNKVGSKGCAGPSSMSGPQRKRRQRCGICGGVGHNRKTCPMNNSVDHVMMSQQGSNLHHVSYFFFHFLTTCTIGLICLYFRCFKAKTEFCDCRMMLTIILMNHSDWMNMMLMVFEGMTGIVHH. 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04141 788 Pfam FAR1 DNA-binding domain 35 132 IPR004330 -
Seca8g04141 788 Coils Coil 68 95 - -
Seca8g04141 788 ProSiteProfiles Zinc finger SWIM-type profile. 517 565 IPR007527 GO:0008270
Seca8g04141 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 22 633 IPR031052 GO:0006355
Seca8g04141 788 SMART 26again6 540 567 IPR006564 GO:0008270
Seca8g04141 788 Pfam MULE transposase domain 252 346 IPR018289 -
Seca8g04141 788 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04141 Seca-Chr8 118303227 118305593 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g04141 FAR1 3.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04141 - - tpra:123913749 693.345