Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04125 ATGCCTTACAAACCTTTTGTATTGCAACTACAGTTAACTTCCTTACTGTCTGAGACCGGGCTGAACATTCAAGAAGCACATGCTTTTTCCACGCTCGATGGATATTCATTGGATGTTTTTGTTGTTGATGGTTGGGCAGTCGAGGAGACTGAGAAGTTAAAACATGAATTGACAGAGAAAATGTTGACACTTCAGGAGACTGAGATACTAAAACATGTTCCAACAAAGAAAATTAAGAAACTTGAGACGCGGCCTGGGTGCAGTCTTCCTAAGGAGAACCATGAGCAAGCTGGTATCAACTGCTTCTATAACCATGCAAACATGCCCAACAGTGAAAACTATGTTTGGGAAATAGATGCAAGCTGTTTAAGATATGAAAAGCAAATTGCATCTGGATCTGTATGTGATTTGTATAAAGGCTCTTACTGTAATCAAGATGTTGCTATCAAAGTCTTTAAGGATGGTTGTCTGAATGAAGATGCAAAGAGGGAGTTTACACAGGAAGTCGATATCCTGAGTAAAATTCAGCACAAGAATGTTATCAAATTTATTGGTGCCTGTACAAAACCAAACCTTTATCTTGTCACAGAGTATTTATCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTATCCTTACCCTTCCATCTTTGCTCAAAGTAGCAATTGATGTTTCCGAAGGAATGAATTACTTGCATCAGAGAGATATTATACATAGAGACCTCAAAGCTGCTAATCTTTTAATGGATGAGAAAGGGGTGGTTAAGGTTGCTGATTTTGGTGTAGCCAGATTGCAAGATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTACCGGTGGATGGCCCCAGAGGTTATTGAACATAAGCCATATAATCACAAAGCCGATGTTTTTAGCTTTGGGATTGTTCTTTGGGAGCTGCTGACAGGAAAGCTTCCTTATGAACATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTACAAAAGGATTTGAGGCCTGAAATTCCAAGAGATACGCATCCAAAGTTAGTGGAATTGCTCCTCTGGTGCTGGCACAAAGATCCATCTTTAAGACCTGATTTCTCAGAAATTCTGATGTTTCTGCAGCACATTACCAAGACGGTTGCTGGGAAGGGGAAAGGGAAGATGAAGGTGAAGGCAAAGGAAAAGGAAAAGGCAATGTAG 1194 0.4045 MPYKPFVLQLQLTSLLSETGLNIQEAHAFSTLDGYSLDVFVVDGWAVEETEKLKHELTEKMLTLQETEILKHVPTKKIKKLETRPGCSLPKENHEQAGINCFYNHANMPNSENYVWEIDASCLRYEKQIASGSVCDLYKGSYCNQDVAIKVFKDGCLNEDAKREFTQEVDILSKIQHKNVIKFIGACTKPNLYLVTEYLSGGNMYDFLHIQKVILTLPSLLKVAIDVSEGMNYLHQRDIIHRDLKAANLLMDEKGVVKVADFGVARLQDQSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFGIVLWELLTGKLPYEHLSPLQAAVGVVQKDLRPEIPRDTHPKLVELLLWCWHKDPSLRPDFSEILMFLQHITKTVAGKGKGKMKVKAKEKEKAM. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04125 397 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 83 379 - -
Seca8g04125 397 Gene3D Transferase(Phosphotransferase) domain 1 201 397 - -
Seca8g04125 397 FunFam Kinase suppressor of Ras 1 112 199 - -
Seca8g04125 397 CDD STKc_MAP3K-like 129 371 - -
Seca8g04125 397 SMART serkin_6 123 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04125 397 ProSiteProfiles Protein kinase domain profile. 123 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04125 397 Pfam Protein tyrosine and serine/threonine kinase 124 370 IPR001245 GO:0004672|GO:0006468
Seca8g04125 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca8g04125 397 Coils Coil 47 67 - -
Seca8g04125 397 Gene3D Phosphorylase Kinase; domain 1 114 200 - -
Seca8g04125 397 PRINTS Tyrosine kinase catalytic domain signature 196 209 IPR001245 GO:0004672|GO:0006468
Seca8g04125 397 PRINTS Tyrosine kinase catalytic domain signature 279 289 IPR001245 GO:0004672|GO:0006468
Seca8g04125 397 PRINTS Tyrosine kinase catalytic domain signature 298 320 IPR001245 GO:0004672|GO:0006468
Seca8g04125 397 PRINTS Tyrosine kinase catalytic domain signature 233 251 IPR001245 GO:0004672|GO:0006468
Seca8g04125 397 PRINTS Tyrosine kinase catalytic domain signature 342 364 IPR001245 GO:0004672|GO:0006468
Seca8g04125 397 SUPERFAMILY Protein kinase-like (PK-like) 112 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04125 Seca-Chr8 117847966 117853732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04125 11 387 MAP Kinase Kinase Kinase AT4G35780 57.592 3.97e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca8g04125 PK_Tyr_Ser-Thr 2.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04125 - - gmx:100818047 503.056