Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04114 ATGGGATTGGGGCTCTTTAAGGCATTATTTTGCTGTACCAATTCCCATGACATTCCCATTGCCTCTTCAGATTCCTCTCCTAAACACACCTACACACAATCCAGAAAAACCAGACCAATGCCAAGTCCATCTCCTCCTCGTCCCAGACACACCCAATCATCAAAAAAAGGACAAATTTTGGGGAAACCTTATGTTGACATAAACCAAATATACGAGATGAAGAAAGAATTGGGAAGGGGTCAATCTGGTGTTACTTATTTGTGTGTAGAGAGGAGAACAGGGAAAGAATACGCGTGCAAATCTATTGCAAGAGCGAAGCTATTGAATGAGCAAGAGATTGAGGATGTGAGAAGAGAGGTTATGATTCTTCAGCATCTTTCAGGGCAACCAAATATAGTGGAATTCAGGGGAGCTTATGAGGATAGGCAGAATGTGCATTTGGTGATGGAGTTGTGTAGTGGGGGTGAACTCTTTGACCGTATTATTGCTAAAGGGAACTATTCAGAGCGTGAAGCAGCCACAGTCATGAGGCAAATTGTTAATGTGGTTCATGTTTGTCACTTCATGGGTGTAGTGCATCGTGATCTCAAGCCAGAGAATTTCTTGTTGGCTACCAAGGAGGAGAATGCTGCAGTAAAAGCTACTGATTTTGGACTATCCATTTTCATTGAAGAAGTACATCATCAATATCTCTCTCTACAAACATTCCATATGGGGCACTGCTTCACCAAACCCCACGATAACAGAGTACCTATCTCCTATGACTATGGTTCACCACCCCATCATTCCCAACAATTACGTCAAAGAACCCAACAACCTCAACCTCAACCTCGTTACCCTTACCGTGCTCCAAAGTCAGACCCAACTCCATCATCCACTTCATCCTCTGCTGATCAACCAATATTAGGCAAACCATACATTGACATAAAGGCCCTTTACACTTTTGGGAAGGAACTCGGAAGGGGTCAATTTGGTGTCACTTATCTTTGCACTGAAAAAGCCACAGGACGAAAATACGCTTGTAAGTCCATTCCAAGACGAAAATTGAATAGAAAGAAGGAAATTGATGATGTTAAGAGGGAAATTATGATCCTACAGCACCTAACAGGACAACCCAACATCGTTGAGTTCAAAGGTGCTTATGAGGATAGACAGAGTGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGTGAGCTTTTTGATCGGATCACTGCTAAGGGTAGTTACTCTGAGCGTGAAGCTGCTTGTATATTCAAGCAAATTGTGAATGTGGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGACCTAAAGCCAGAGAATTTCTTGATGGTTAGTAAGGATGATAAGGCACCTTTGAAAGCCACTGATTTTGGATTGTCTGTCTTCATCGAAGAAGGTAAAGTGTATAAAGAACTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAAAAGGAATTATGGAAAGGAGATAGATGTGTGGAGCGCAGGAATAATATTATACATCCTCCTAAGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAGGGGATATTTGAAGCAATTTTGGGAGGTAATCTTGATCTGGAAAGCGCACCTTGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGACTTATGACCCTAAAAAACGCATTACAGCTTCTGAAGCTCTTGAACACCCATGGATGAAGGAAGGTGGTAAAGCATCTGACAAGCCTATAGACAATGCTGTTTTAATTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGATACTGACCGTAGTGGCACAATCACATATGATGAACTGAAATCTGGATTGTCCAAATTGGGATCCAAGCTTAGTGAAGTTGAAATAAAGCAGCTAATGGAAGCTGCTGATGTTGACAACAATGGGACTATTGACTATCATGAATTCATCACTGCCACTATAAACAGGCATAAACTTGAGAGGGATGAGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATATAACAAGAGACGAGCTTAGACAAGCTTTGACTGAGTATCAAATGGGAGATGAAGAGGCTATAGATGAAGTCATTAATGATGTTGACACTGACAACGATGGGAAAATTAATTACCAGGAGTTTGTGGCCATGATGAGAAAAGGGACCCTGGATAATGATGAGAAAGAGAAACCACGATAA 2295 0.4135 MGLGLFKALFCCTNSHDIPIASSDSSPKHTYTQSRKTRPMPSPSPPRPRHTQSSKKGQILGKPYVDINQIYEMKKELGRGQSGVTYLCVERRTGKEYACKSIARAKLLNEQEIEDVRREVMILQHLSGQPNIVEFRGAYEDRQNVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQIVNVVHVCHFMGVVHRDLKPENFLLATKEENAAVKATDFGLSIFIEEVHHQYLSLQTFHMGHCFTKPHDNRVPISYDYGSPPHHSQQLRQRTQQPQPQPRYPYRAPKSDPTPSSTSSSADQPILGKPYIDIKALYTFGKELGRGQFGVTYLCTEKATGRKYACKSIPRRKLNRKKEIDDVKREIMILQHLTGQPNIVEFKGAYEDRQSVHLVMELCLGGELFDRITAKGSYSEREAACIFKQIVNVVHACHFMGVMHRDLKPENFLMVSKDDKAPLKATDFGLSVFIEEGKVYKELVGSAYYVAPEVLKRNYGKEIDVWSAGIILYILLSGVPPFWAETEKGIFEAILGGNLDLESAPWPSISAAAKDLIRKMLTYDPKKRITASEALEHPWMKEGGKASDKPIDNAVLIRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYDELKSGLSKLGSKLSEVEIKQLMEAADVDNNGTIDYHEFITATINRHKLERDENLFKAFQYFDKDNSGYITRDELRQALTEYQMGDEEAIDEVINDVDTDNDGKINYQEFVAMMRKGTLDNDEKEKPR. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04114 764 MobiDBLite consensus disorder prediction 286 300 - -
Seca8g04114 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Seca8g04114 764 ProSitePatterns EF-hand calcium-binding domain. 663 675 IPR018247 -
Seca8g04114 764 FunFam calcium-dependent protein kinase 1 399 578 - -
Seca8g04114 764 ProSiteProfiles EF-hand calcium-binding domain profile. 614 649 IPR002048 GO:0005509
Seca8g04114 764 ProSiteProfiles EF-hand calcium-binding domain profile. 650 685 IPR002048 GO:0005509
Seca8g04114 764 SUPERFAMILY Protein kinase-like (PK-like) 71 227 IPR011009 -
Seca8g04114 764 ProSiteProfiles EF-hand calcium-binding domain profile. 686 721 IPR002048 GO:0005509
Seca8g04114 764 ProSitePatterns EF-hand calcium-binding domain. 627 639 IPR018247 -
Seca8g04114 764 MobiDBLite consensus disorder prediction 22 38 - -
Seca8g04114 764 FunFam Calcium-dependent protein kinase 1 315 398 - -
Seca8g04114 764 ProSiteProfiles EF-hand calcium-binding domain profile. 722 756 IPR002048 GO:0005509
Seca8g04114 764 MobiDBLite consensus disorder prediction 22 58 - -
Seca8g04114 764 CDD STKc_CAMK 313 570 - -
Seca8g04114 764 ProSiteProfiles Protein kinase domain profile. 313 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04114 764 ProSitePatterns EF-hand calcium-binding domain. 734 746 IPR018247 -
Seca8g04114 764 FunFam Calcium-dependent protein kinase 1 579 754 - -
Seca8g04114 764 Pfam EF-hand domain pair 619 679 IPR002048 GO:0005509
Seca8g04114 764 Pfam EF-hand domain pair 689 751 IPR002048 GO:0005509
Seca8g04114 764 PANTHER SERINE/THREONINE-PROTEIN KINASE 309 746 - -
Seca8g04114 764 SUPERFAMILY Protein kinase-like (PK-like) 313 578 IPR011009 -
Seca8g04114 764 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Seca8g04114 764 Gene3D Phosphorylase Kinase; domain 1 315 398 - -
Seca8g04114 764 SMART serkin_6 71 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04114 764 SMART serkin_6 313 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04114 764 Pfam Protein kinase domain 71 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04114 764 Pfam Protein kinase domain 313 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04114 764 SMART efh_1 725 753 IPR002048 GO:0005509
Seca8g04114 764 SMART efh_1 690 718 IPR002048 GO:0005509
Seca8g04114 764 SMART efh_1 618 646 IPR002048 GO:0005509
Seca8g04114 764 SMART efh_1 654 682 IPR002048 GO:0005509
Seca8g04114 764 FunFam Calcium-dependent protein kinase 1 73 156 - -
Seca8g04114 764 Gene3D - 579 757 - -
Seca8g04114 764 ProSitePatterns EF-hand calcium-binding domain. 699 711 IPR018247 -
Seca8g04114 764 Gene3D Transferase(Phosphotransferase) domain 1 157 287 - -
Seca8g04114 764 Gene3D Transferase(Phosphotransferase) domain 1 399 578 - -
Seca8g04114 764 MobiDBLite consensus disorder prediction 252 300 - -
Seca8g04114 764 SUPERFAMILY EF-hand 610 751 IPR011992 -
Seca8g04114 764 ProSitePatterns Protein kinases ATP-binding region signature. 319 342 IPR017441 GO:0005524
Seca8g04114 764 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04114 764 MobiDBLite consensus disorder prediction 258 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04114 Seca-Chr8 117608250 117619015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04114 238 764 EF-hand Containing Proteins AT3G20410 65.505 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g04114 Pkinase 3.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04114 K13412 - gmx:100816157 789.645