Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04112 ATGTATGTTGGATTCTCATCCTCTACTGGGGCAGTTATAACTTCCCACTATATTCTGGGTTGGAGCTTTAAGGTCAATGGCGAGGCTCAAGAACTCGCAATCCCTGAACTCCCCAAGTTGCCTAGACTACGCAATAAAAAAGAGTCTATGTTTTTCAGTGTTGGATTGCTTCTGATATCACTCAGTTTGGTTCTTGTGATGGCTCTAGCGATTGTTTATGTCATCAAAAGGAAGAAGAAGTTTGCTGAGCTTCTAGAAGATTGGGAACAGGAATATGGCCTTCATAGATTCAAGTTTAAAGATCTTTACTTTGCCACAAAGGGGTTCAGGATGTCCCATGAATCCAGACAAGGGATGAGGGAATTTGTGTCAGAAATTGTTAGCATGGGTCGTCTTCGCCACAGGAATCTGGTTCCCCTTCTGGGCTATTGCAGGCGCAAAGGAGAGTTGCTTTTAGTCTATGACTACATGCCTAATGGAAGCCTAGACACGTATCTCTATACCCAACCAAAAGCAAGGTTGCATGACCATGGAACTGATCCTCAAACTACCCTTGTGGCGGGAACTCTTGGGTATCTGGCCCCTGAGTTTACTAGAACGGGGGAATGTGAGAGTGTAATTCTGGTTGATTGGGTGTTTGATTGCTGGAAAAAAGGTTATATTCTTGAGGCAAAGGACCCAAATTTGGGCACAGATTATAGGTCAGAGGAGGTAAAACTTGTGTTAAAACTTGGTTTGTTGTGCTCACATTCTGAGCCTTTGGCTAGACCAAGCATGCGCCAAGTTGTGCAATACCTGGAGAGGGATGTGCCTCTGCCAGATTTATCATTGTTTAGCTCATCTTCCACTGGTTTAACGTTTGGCCGAAATGAAAGTTTTCAGGACTTTCCAAGGTCTTATCCATCTTCTACAGATAGGCCATTCTGCCATACTTCTTCAGTTGCTGAATCACTTCTCTCTGGTGGTCGTTGA 972 0.4403 MYVGFSSSTGAVITSHYILGWSFKVNGEAQELAIPELPKLPRLRNKKESMFFSVGLLLISLSLVLVMALAIVYVIKRKKKFAELLEDWEQEYGLHRFKFKDLYFATKGFRMSHESRQGMREFVSEIVSMGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDTYLYTQPKARLHDHGTDPQTTLVAGTLGYLAPEFTRTGECESVILVDWVFDCWKKGYILEAKDPNLGTDYRSEEVKLVLKLGLLCSHSEPLARPSMRQVVQYLERDVPLPDLSLFSSSSTGLTFGRNESFQDFPRSYPSSTDRPFCHTSSVAESLLSGGR. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04112 323 Gene3D Transferase(Phosphotransferase) domain 1 171 280 - -
Seca8g04112 323 Pfam Protein tyrosine and serine/threonine kinase 107 193 IPR001245 GO:0004672|GO:0006468
Seca8g04112 323 PANTHER - 172 271 - -
Seca8g04112 323 Pfam Legume lectin domain 1 38 IPR001220 GO:0030246
Seca8g04112 323 Gene3D Phosphorylase Kinase; domain 1 100 157 - -
Seca8g04112 323 SUPERFAMILY Protein kinase-like (PK-like) 98 277 IPR011009 -
Seca8g04112 323 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 147 IPR013320 -
Seca8g04112 323 ProSiteProfiles Protein kinase domain profile. 58 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04112 323 Gene3D - 1 53 - -
Seca8g04112 323 SMART tyrkin_6 75 266 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04112 Seca-Chr8 117576651 117577959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04112 1 323 Receptor kinase-like Gene Family AT2G37710 45.995 4.18e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca8g04112 PK_Tyr_Ser-Thr 1.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04112 - - mtr:25498550 391.349