Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g04104 | ATGCTTGACTCAGTGCTTCTGGCGCTTTTCTTGCCCTGTCTAGGCATGAGCGCTGTCTTCATAGTCTACATGTGCCTTCTCTGGTACGCCACCACTCACCAGCCAGACATCAGGCTACCGACTAAGCCCGTCACCGAGAAGGGCCTCTCCCCGTCGGAGCTTGAAAAGTTACCCAGAATCACCGGTAAAGAGCTTGTCACAGGGACTGAATGCGCCGTGTGCCTCGACGAGATCGGGAACGATCAACCGGCACGTGTGCTTCCTGGTTGCAACCATGGCTTCCATTTGGAATGCGCTGACACCTGGCTTTCCAAGCACCCTCTTTGTCCGGTTTGTAGAGCCAAACTCGATCCCAATCTCTTCACTCCCTCTGAAAATAATCCATGTTGA | 390 | 0.5359 | MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHQPDIRLPTKPVTEKGLSPSELEKLPRITGKELVTGTECAVCLDEIGNDQPARVLPGCNHGFHLECADTWLSKHPLCPVCRAKLDPNLFTPSENNPC. | 130 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g04104 | 129 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 16 | 123 | - | - | |
Seca8g04104 | 129 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 119 | IPR013083 | - | |
Seca8g04104 | 129 | Pfam | Ring finger domain | 70 | 113 | IPR001841 | - | |
Seca8g04104 | 129 | ProSiteProfiles | Zinc finger RING-type profile. | 71 | 113 | IPR001841 | - | |
Seca8g04104 | 129 | SUPERFAMILY | RING/U-box | 70 | 120 | - | - | |
Seca8g04104 | 129 | SMART | ring_2 | 71 | 112 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g04104 | Seca-Chr8 | 117497719 | 117498108 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g04104 | 1 | 129 | C3H Transcription Factor Family | AT5G42200 | 55.147 | 3.27e-46 | 145 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g04104 | K19037 | - | gmx:100817919 | 225.713 |