Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04097 ATGGTCAAATTTATGTTTGTTTTGGCCAGCCTCATCGGATTATTTTGTTTCATAACCAATACCTATGCCTTTTCACCGTCTGGTTGGACTAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCCTCAGGGACTATGGCTAGTGGTTTCATATGTTTTTTCCCCTGCCTACCCTACTCTATAAAGATTGAATCTTTTTTGTTTCCCTTATGTGTGATTGCAGGAGGAGCTTGTGGGTATGGGAATCTGTATTCAACAGGGTATGGAACTAGAACTGCAGCTTTAAGTACTGCCTTATTTAATGATGGAGCTTCATGTGGGGAGTGCTACAAAATTATCTGTGATTATAAAACAGACCCTAGATGGTGCATAAAAGGAAGATCTATTACAATAACTGCCACAAACTTCTGCCCTCCTAATTTTGCTCTTCCCAACAACAATGGAGGCTGGTGCAACCCACCTCTCAAGCATTTTGACATGGCTCAACCCGCATGGGAAAAGATTGGAATTTACAGAGGAGGGATTATCCCCGTGTTGTTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCACTGTGAATGGGAGAGACTACTTTGAGCTTGTGTTGATTAGCAATGTGGCTGGGGCTGGATCCATTCAATCTGTGTCCATTAAAGGCACAAAGACAGGGTGGATGGCTATGTCAAGAAACTGGGGTTCTAATTGGCAATCCAATGCTTATTTGAATGGACAATCTTTGTCCTTTAGGGTCACAACCACTGATGGAGAAACCAGAGTTTTCCAAAACATTGTTCCAGCAAATTGGGCTTTTGGCCAAACTTTCTCTAGCCCGGTCCAGTTTTAA 852 0.4308 MVKFMFVLASLIGLFCFITNTYAFSPSGWTNAHATFYGGSDASGTMASGFICFFPCLPYSIKIESFLFPLCVIAGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDYKTDPRWCIKGRSITITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLFQRVPCKKHGGVRFTVNGRDYFELVLISNVAGAGSIQSVSIKGTKTGWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIVPANWAFGQTFSSPVQF. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04097 283 FunFam Expansin 190 283 - -
Seca8g04097 283 Pfam Lytic transglycolase 92 179 IPR009009 -
Seca8g04097 283 CDD DPBB_EXPA_N 28 185 - -
Seca8g04097 283 Gene3D - 190 283 IPR036749 -
Seca8g04097 283 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 279 IPR007117 -
Seca8g04097 283 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 190 IPR007112 -
Seca8g04097 283 PANTHER EXPANSIN-A15 6 279 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 236 257 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 265 281 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 129 139 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 165 178 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 116 127 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 189 201 IPR002963 GO:0009664
Seca8g04097 283 PRINTS Expansin signature 148 165 IPR002963 GO:0009664
Seca8g04097 283 SUPERFAMILY Barwin-like endoglucanases 28 208 IPR036908 -
Seca8g04097 283 Gene3D - 16 186 IPR036908 -
Seca8g04097 283 SUPERFAMILY PHL pollen allergen 187 279 IPR036749 -
Seca8g04097 283 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Seca8g04097 283 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Seca8g04097 283 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576
Seca8g04097 283 SMART dpbb_1 92 180 IPR007112 -
Seca8g04097 283 Pfam Expansin C-terminal domain 191 268 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04097 Seca-Chr8 117344700 117347361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04097 92 283 Expansin Gene Family AT1G20190 80.729 1.06e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04097 - - gmx:548040 491.5