Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04088 ATGAGGGTGGAGGGAACTTTGCCCATAAATCCTTGGTATATTGGTGGTCCTGTCATCAAGGGATTTGGTCGTGGCTCGAAGGTATTGGGGATCCCCACAGAACCCATTGCTTTGATTGATACCTCAACTGGCACACAGGGGCTGCATTGGTTGAACTTTGAATGTAATTGCTTTGGTTTTGAATTGCAGGCCTTAGATTACTACCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATGATGCTTTTTCAGTAG 300 0.4333 MRVEGTLPINPWYIGGPVIKGFGRGSKVLGIPTEPIALIDTSTGTQGLHWLNFECNCFGFELQALDYYHSQGIMHRDVKPHNVMIDHELRKLRLMMLFQ. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04088 99 ProSitePatterns Serine/Threonine protein kinases active-site signature. 73 85 IPR008271 GO:0004672|GO:0006468
Seca8g04088 99 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04088 99 Pfam Protein kinase domain 62 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04088 99 Pfam Riboflavin kinase 10 40 IPR015865 GO:0008531|GO:0009231
Seca8g04088 99 Gene3D Transferase(Phosphotransferase) domain 1 62 94 - -
Seca8g04088 99 Gene3D - 1 53 IPR023465 GO:0008531|GO:0009231
Seca8g04088 99 SUPERFAMILY Protein kinase-like (PK-like) 62 90 IPR011009 -
Seca8g04088 99 PANTHER CASEIN KINASE II SUBUNIT ALPHA 62 95 IPR045216 GO:0004674|GO:0006468
Seca8g04088 99 SUPERFAMILY Riboflavin kinase-like 6 38 IPR023465 GO:0008531|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04088 Seca-Chr8 117083410 117089146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04088 27 92 MAP Kinase Kinase Kinase AT5G50180 35.000 6.93e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca8g04088 Pkinase 4.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04088 K03097 K20884 pda:103700812 69.707