Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04080 ATGATTCTCTTTATGAATCTCCCTTCTTCTCGTGCACCTTTTCTTCCGACTTTAATTTGCACAACACTTCTCCGATTGACACTGTTATTTGCTATTTCCAGCAAAACAAAAGCTCTTGTGAAACTGCCACCAAATGTTACATTTCCAGCAGTGTTGGTGTTTGGAGATTCTATCATGGATACCGGTAACAACAACAACATGAAAACTCTAGCTCGGTGCAATTTCGAACCATACGGAAAAGATTTTCAGGGAGGGACCCCAACTGGCCGATTTAGCAATGGAAAAGTTCCATCCGACATTGTAGTTGAAGAATTAGGCATTAAAGAGCTTCTACCAGCATACTTGGATCCAAATCTCCAGCCTAGTGAATTGCCCACAGGTGTTTGCTTTGCATCCGGTGGCGCCGGATACGATCCATTTACAGCACAATTAGAGGTACCGAATTTTCAGCACCAATTTTTCTCACTCCAAAAGTCAGCTATACCTATATCTGGTCAGCTAGACTTATTCAAAGAATACATTGGGAAGCTAAAAGGACTAGTTGGAGAGGACAGAGCAAACTTCATCCTAGCCAACAGTTTTTATCTTGTGGTATTGGGCAGCAATGACATTTCCAACGCATACTTCTTGTCTCGCATTAGACAAAAACAATATGATTTTCCTACTTACGCTGACCTTATGGTCAGCTCTGCTTCTAATTTCTACAAGGAATTATATGAACTAGGCGCACGGAGGATTGGAGTATTCAGTGCGCCGCCGATTGGATGTGTGCCGTTTCAGAGAACAATGGCAGGAGGAATAACAAGAAACTGTGTGGATAATTACAACGATGCAGTGGTGTTATTTAACAGCAAACTGTCAAAGGAGATCGATTCCATTAATCAGAACCTTCCAGATAGCAGGATCGTTTACATTGATGTTTACAACCCTCTGCTTGATATCATTGTAAACAACCAAAAATATGGCTATACAGTCGGAGACAGAGGGTGCTGTGGCACAGGCACTATTGAGGTTACGTTGTTATGCAACCATTTGGAGCCCACATGTCCCAACGCTTCCGAGTATGTGTTTTGGGACAGTTTTCACCCTACTGAAGGCGTTTACAAAAAGCTAGTAGCCCCCGTTCTCCAAAAATATATGTACCAATTCAAATGA 1155 0.4208 MILFMNLPSSRAPFLPTLICTTLLRLTLLFAISSKTKALVKLPPNVTFPAVLVFGDSIMDTGNNNNMKTLARCNFEPYGKDFQGGTPTGRFSNGKVPSDIVVEELGIKELLPAYLDPNLQPSELPTGVCFASGGAGYDPFTAQLEVPNFQHQFFSLQKSAIPISGQLDLFKEYIGKLKGLVGEDRANFILANSFYLVVLGSNDISNAYFLSRIRQKQYDFPTYADLMVSSASNFYKELYELGARRIGVFSAPPIGCVPFQRTMAGGITRNCVDNYNDAVVLFNSKLSKEIDSINQNLPDSRIVYIDVYNPLLDIIVNNQKYGYTVGDRGCCGTGTIEVTLLCNHLEPTCPNASEYVFWDSFHPTEGVYKKLVAPVLQKYMYQFK. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04080 384 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 51 62 IPR008265 GO:0006629|GO:0016298
Seca8g04080 384 PANTHER GDSL ESTERASE/LIPASE EXL3 30 372 - -
Seca8g04080 384 Pfam GDSL-like Lipase/Acylhydrolase 51 372 IPR001087 GO:0016788
Seca8g04080 384 Gene3D SGNH hydrolase 41 380 IPR036514 -
Seca8g04080 384 CDD SGNH_plant_lipase_like 49 379 IPR035669 -
Seca8g04080 384 FunFam GDSL esterase/lipase APG 40 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04080 Seca-Chr8 116836165 116840395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04080 45 377 Pollen Coat Proteome AT1G75910 39.286 9.33e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04080 - - gmx:100776651 536.954