Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04062 ATGTTCCTCTTCTTCAATTGCAGCAAACAGTGGATTCAAAACCCAAACTGCAACAGCCACAACAGAACAAGGGACAGTGAAAGTTTGCAACAACGGCCCTGTCGTTCTTCAGAGTTCCAAATCACTCACGTTTCTTCTTTTATGCGTAAACCATCACTGTCTTCAACTTCTATGAAAAGTGCAATTCCTTGGGACTTTCCTGCTATAAAGTGGGGATCATCCCCTGCTCAGTGCCATTGCTCTAAGAAAAGAAATCTATCAATATGTTACAAGTTCACTAATGTGAGAGAGTGCCCAGCACGCAAACATGTGGAGCGCGCTGTGGATGATTCCAATATCAATATGCTTATTGTCACCTACGAAGGAGATCATAATCATTGA 381 0.4226 MFLFFNCSKQWIQNPNCNSHNRTRDSESLQQRPCRSSEFQITHVSSFMRKPSLSSTSMKSAIPWDFPAIKWGSSPAQCHCSKKRNLSICYKFTNVRECPARKHVERAVDDSNINMLIVTYEGDHNH. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04062 126 Pfam WRKY DNA -binding domain 87 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g04062 126 Gene3D WRKY domain 5 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g04062 126 ProSiteProfiles WRKY domain profile. 84 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g04062 126 SMART WRKY_cls 82 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g04062 126 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 90 126 IPR044810 GO:0003700
Seca8g04062 126 SUPERFAMILY WRKY DNA-binding domain 90 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04062 Seca-Chr8 116298405 116299275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04062 90 126 WRKY Transcription Factor Family AT2G24570 70.270 4.31e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g04062 WRKY 7.7e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04062 - - lja:Lj0g3v0162929.1 115.546