Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04061 ATGCAAACAGGGGAGAGGCAAACGGCTCGTTTGCGCTTGAAATATTTACAGTCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCAAATATCATTTTCCACATCTCGAGTGATGCAATCTTGGTACAAGATGCAATTGGTGACAAGACAGGCCATACCATGCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTTACATCAGTGTGGCAGCTTACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGGGGAGCTTATACAATAATTATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGGAAGGTTGCTGAAGAGGTAATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTCGTTCCTACTCCAAGTCACTTGATAATGCTCTAAAGCTGGGAAAGAAGAGTGGTTTTGCAAAAGGGATTGGAGTAGGCTTTACATATGGGCTATTATTTTGTGCTTGGGCATTGCTTCTTTGGTATGCTAGCATACTTGTGAGGCATCATAAGACAAATGGAGGGAAAGCTTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCACTTGGTCAAGCTGCTCCAAACCTTGCTTCCATTGCTAAAGGGCGTACAGCTGCAGCCAATATCATGAACATGATTGCATCTGTCTCAGACACTTCAAAAAAGTTGGATGATGGCACTGTTTTGCCACAAGTAGCAGGGAAAATTGAGTTTTGTGATGTCTGCTTTGCTTACCCTTCAAGATCCAATATGGTCTTTGAAAATTTGAGCTTCTCAGTGAGTGCTGGGAAGACCGTAGCAATTGTTGGTCCTAGTGGTTCTGGAAAGAGCACTATCATTTCCATTATTCAACGGTTCTATGACCCTACTTCAGGTAAGATCCTGTTGGATGGATATGACTTACAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGAAACATTTTATTTGGAAAAGAAGATGCCAACATGGATCAAATCATACATGCCTCCAAGGCTGCAAATGCTCATTCTTTCATTACAGGATTACCTGATGGTTATCATACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGACAAAAGCAAAGAATTGCTATAGCAAGAGCTGTGCTCAGAAACCCAAAAATATTGCTTTTAGATGAGGCCACTAGTGCTCTTGATGCTGAATCAGAACTCATTGTTCAACAGGCATTGGAAAAAATAATGTCAAACCGGACAACAATAATTGTTGCACATCGATTATCCACCATAAGAGATGTGGACACAATTGTTGTGTTGAAAAATGGCCAGGTTGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAAAAATGGTGAGTATGTGAATCTAGTGAGTTTGCAGTCATCACAAAATCTAACAAGCTCTAGCTCAATATCTCGCTCTGGAAGCTCAAAGAATTCTAGTTTTAGAGAACCTTCAGACAATCTGAACAATGAGGAGGAGTTGAAGTTTATGACAACAAGAGAACTTCAATCAAGTGGTCAAGGCTTGCCATCAAACACTGCTTCCACTCCATCAATTTTGGATTTACTAAAACTGAATGCCCCAGAGTGGCCCTATGCAATACTTGGGTCAATAGGTGCAGTGATGGCTGGCATGGAAGCTCCTCTCTTTGCCCTTGGAATCACCCACATTTTGACTGCATTTTATTCTCCTCATGGTTCTAAAATCAAGGAAGAAGTTGATAGGGTAGCTCTTATATTTGTTGGAGTGGCTGTTGTTACTATACCTATTTATCTATTGCAACACTACTTTTATACATTGATGGGAGAGCGTCTCACTGCCCGTGTGCGTTTATTAATGTTCTCGGCTATTCTTACCAATGAAATTTCATGGTTTGATTTGGATGAGAACAACACTGGCTCACTAACAGCCATGCTAGCTGCAGATGCAACATTAGTAAGAAGTGCTCTGGCTGACAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTAACAGCATTTGTTATTGCCTTCACATTGAGTTGGAAACTAACATCAGTGGTTGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACAGAGCAACTATTTCTCAAGGGATTTGGAGGAGATTACAGCCATTCTTACTCTAGAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGTACTGTTGCTGCTTTTGGTGCAGAAGATCGAATCTCAATCCAATTTGCCTCTGAATTGAACAAACCTAACAAGAAGGCACTCTTACGAGGCCACATATCAGGTTTTGGCTATGGTGTGACGCAGCTGTTTGCTTTCTGTTCCTATGCACTTGGTCTTTGGTATGCATCCATTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACCTCATGAAGTCCTTCATGGTCTTAATCATCACAGCTCTAGCAATAGCAGAAACACTAGCTCTTACCCCTGACATTGTGAAGGGGTCACAAGCATTGGGCTCAGTTTTCAGCATTCTCCAAAGAAGAACAGCCATCAACCCTGACAATCCCAACTCAAAGATGATAACTGATGTCAAAGGAGAGATAATGTTTAAAAATGTGTGCTTCAAGTACCCAATGAGACCTGATATCACCATATTTCAGAACCTAAACCTCAAAGTCTCAGCAGGAAAGAGTCTGGCAGTTGTAGGCCAAAGTGGTTCAGGGAAGAGCACTGTGATTGCTCTTGTAATGAGATTTTATGACCCCACTTCAGGGTCAGTTCTGATAGATGAATGTGACATCAAAAGCCTAAACTTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCTACCACCATTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCAAAAGCGGCAAATGCTCATGAATTCATCAGTAGAATGCCAGAAGGGTACAGAACTGAGGTTGGTGAGAGGGGAGTGCAGTTATCAGGAGGACAAAAGCAGAGGGTGGCAATAGCTAGAGCTATTTTGAAAGATCCATCTATTCTTCTGTTGGATGAAGCAACAAGTGCATTGGACACAGTTTCAGAAAGGTTGGTCCAAGAGGCTCTTGATAAGCTTATGGAAGGCAGAACAACAATTTTGGTAGCTCACAGGCTCTCAACTGTTCGTGATGCAGACAGCATTGCAGTGCTGCAACATGGAAAGGTTGCTGAAATGGGTAGCCATGAAAGGCTGGTGGCAAAACCTGGAAGCATTTATAAGCAATTGGTTAGTCTACAGCAAGAAAAACGTGACCAAGAAGGCCATTAA 3414 0.4177 MQTGERQTARLRLKYLQSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHTMRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVRSYSKSLDNALKLGKKSGFAKGIGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLASIAKGRTAAANIMNMIASVSDTSKKLDDGTVLPQVAGKIEFCDVCFAYPSRSNMVFENLSFSVSAGKTVAIVGPSGSGKSTIISIIQRFYDPTSGKILLDGYDLQNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDANMDQIIHASKAANAHSFITGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMSNRTTIIVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSKNGEYVNLVSLQSSQNLTSSSSISRSGSSKNSSFREPSDNLNNEEELKFMTTRELQSSGQGLPSNTASTPSILDLLKLNAPEWPYAILGSIGAVMAGMEAPLFALGITHILTAFYSPHGSKIKEEVDRVALIFVGVAVVTIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEISWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTSVVVACLPLLIGASITEQLFLKGFGGDYSHSYSRATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKKALLRGHISGFGYGVTQLFAFCSYALGLWYASILIKKKESNFGDLMKSFMVLIITALAIAETLALTPDIVKGSQALGSVFSILQRRTAINPDNPNSKMITDVKGEIMFKNVCFKYPMRPDITIFQNLNLKVSAGKSLAVVGQSGSGKSTVIALVMRFYDPTSGSVLIDECDIKSLNLRSLRLRIGLVQQEPALFSTTIYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYRTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIAVLQHGKVAEMGSHERLVAKPGSIYKQLVSLQQEKRDQEGH. 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04061 1137 Gene3D - 255 521 IPR027417 -
Seca8g04061 1137 SMART AAA_5 917 1105 IPR003593 GO:0016887
Seca8g04061 1137 SMART AAA_5 283 469 IPR003593 GO:0016887
Seca8g04061 1137 ProSitePatterns ABC transporters family signature. 1029 1043 IPR017871 GO:0005524|GO:0016887
Seca8g04061 1137 SUPERFAMILY ABC transporter transmembrane region 3 234 IPR036640 GO:0005524|GO:0016020
Seca8g04061 1137 Gene3D ABC transporter type 1, transmembrane domain 2 864 IPR036640 GO:0005524|GO:0016020
Seca8g04061 1137 FunFam ABC transporter B family member 4 247 500 - -
Seca8g04061 1137 CDD ABC_MTABC3_MDL1_MDL2 890 1128 - -
Seca8g04061 1137 Pfam ABC transporter transmembrane region 2 206 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g04061 1137 Pfam ABC transporter transmembrane region 569 841 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g04061 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 879 1128 IPR027417 -
Seca8g04061 1137 ProSitePatterns ABC transporters family signature. 395 409 IPR017871 GO:0005524|GO:0016887
Seca8g04061 1137 Pfam ABC transporter 275 423 IPR003439 GO:0005524
Seca8g04061 1137 SUPERFAMILY ABC transporter transmembrane region 556 868 IPR036640 GO:0005524|GO:0016020
Seca8g04061 1137 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 890 1126 IPR003439 GO:0005524
Seca8g04061 1137 MobiDBLite consensus disorder prediction 499 523 - -
Seca8g04061 1137 MobiDBLite consensus disorder prediction 499 519 - -
Seca8g04061 1137 CDD ABC_6TM_Pgp_ABCB1_D2_like 557 873 - -
Seca8g04061 1137 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 568 855 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g04061 1137 FunFam ABC transporter B family member 4 880 1134 - -
Seca8g04061 1137 PANTHER ABC TRANSPORTER B FAMILY 1 579 IPR039421 -
Seca8g04061 1137 CDD ABC_MTABC3_MDL1_MDL2 257 493 - -
Seca8g04061 1137 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 230 - -
Seca8g04061 1137 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g04061 1137 Gene3D - 880 1137 IPR027417 -
Seca8g04061 1137 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 257 492 IPR003439 GO:0005524
Seca8g04061 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 493 IPR027417 -
Seca8g04061 1137 Pfam ABC transporter 909 1057 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04061 Seca-Chr8 116287683 116294159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04061 1 1129 Calmodulin-binding Proteins AT2G36910 50.130 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04061 K05658 - gmx:100787093 1953.33