Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04058 ATGGGAATTTTAAGTACCATAGCTAGTTTGTTGGGATTTGGAGTGGGAACTTCCCTTGGACTGGTGATTGGATACTATATGTTCATATACTTCCAGCCAACAGATGTCAAGGATCCAACAATTCGTCCTTTGGTTGAACAAGATTCTAAAACTCTGCAACAGATGCTTCCAGAGATACCCTTTTGGATTAAAAACCCAGACTTTGATCGACTTGACTGGCTTAACAAATTTATTGAGTATATGTGGCCTTATCTAAACAAGGCAATTTGCAAGACTGCAAGGAATATAGCAAAGCCCATTATTGCTGAACAAATTCCAAAGTACAAAATTGATTCAGTTGAATTTGAAGAACTTAACTTGGGTTCTCTACCACCAACTTTTCAAGGAATGAAAGTCTATAGTACTGATGAGAAGGAGTTGATTATGGAACCATTAATGAAATGGGCTGGGAATCCTAACATTATAGTTGCAGTTAAAGCATTTGGACTGCGAGCCACAGTTCAGGTTGTTGATCTGCAAGTGTTTGCTGCTCCACGTATAACTCTGAAGCCTTTGGTTCCAAGTTTTCCTTGCTTTGCCAATATTTACGTGTCTCTCATGGAGAAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGTCTATTCCTGGTCTTTACAGGATTGTCCAGGAACTCATAAAAGATCAGGTTGCAAAAATGTATTTGTGGCCCAAGGCCCTCGAGGTGCCAATAATGGATCCAGCAAAGGCCATGAAAATGCCAGTTGGAATCCTTCATGTGAAGGTTCTGAGGGCAGTGAAGCTTAGAAAGAAAGATTTATTGGGAGCATCAGACCCTTATGTGAAACTTAAACTCACAGATGATAAACTTTCTTCAAAGAAAACAACTGTGAAACACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAATATGGTCATTAAAGATCCAGAATCTCAAGTCTTAGAACTCAGTATTTATGACTGGGAACAGGTAAGTGTCTTCAGATGCAATTCTAGAATAAATTTGGATGTAACATTTCCCTAA 1059 0.3881 MGILSTIASLLGFGVGTSLGLVIGYYMFIYFQPTDVKDPTIRPLVEQDSKTLQQMLPEIPFWIKNPDFDRLDWLNKFIEYMWPYLNKAICKTARNIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYSTDEKELIMEPLMKWAGNPNIIVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGLYRIVQELIKDQVAKMYLWPKALEVPIMDPAKAMKMPVGILHVKVLRAVKLRKKDLLGASDPYVKLKLTDDKLSSKKTTVKHKNLNPEWNEEFNMVIKDPESQVLELSIYDWEQVSVFRCNSRINLDVTFP. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04058 352 Pfam C2 domain 260 336 IPR000008 -
Seca8g04058 352 CDD SMP_SYT 60 248 - -
Seca8g04058 352 CDD C2 262 337 - -
Seca8g04058 352 SMART C2_3c 261 348 IPR000008 -
Seca8g04058 352 Gene3D C2 domain 256 349 IPR035892 -
Seca8g04058 352 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Seca8g04058 352 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Seca8g04058 352 PRINTS C2 domain signature 326 334 IPR000008 -
Seca8g04058 352 PRINTS C2 domain signature 277 289 IPR000008 -
Seca8g04058 352 PRINTS C2 domain signature 304 317 IPR000008 -
Seca8g04058 352 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 8 336 IPR045050 GO:0008289
Seca8g04058 352 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 337 IPR035892 -
Seca8g04058 352 ProSiteProfiles C2 domain profile. 240 352 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04058 Seca-Chr8 116137376 116143171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04058 259 349 C2H2 Transcription Factor Family AT4G05330 34.783 9.00e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04058 - - gmx:100778906 600.897