Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04057 ATGGTGTTTTTGGCTCTCTGCAAGCACCTTTCATTGGATCCAAGTGTTATTCTAGCTGATAGTTTAGACAATGATATTAAGAGTCTTTACTTAAAAATCACAACAGCATCTGGACATGGGGTTAATCACTCTGATGAGGTGTTGAAGTGGTATGTTCTTTCAAAGACTTTGGCTGAAGATGTTGCCTGGAAATTTGTAAGAGAAAGCAACATTGACATGGTTACTATTAACCCAACAATGGTGATAGGACCTCTCTTGCAACTGATGCAAATTGTGAAGACTCTGCATGAGGTTATTCTGCGTATATTGGGATTTGGAGATCTTGGTTGCCAGGGAATGAGGATTCCTGTTGGGAAACATTTTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCATCATGCTTGCCTATAATGATTGATATTGGCACAAACAATAAGAAAGTTGCAAATATAATACGTGTTGCTGCTAGATCATGGTTGTGTGGTTTGTTCTTAAAAGTTAGAGACAGGGTAGGTGTGGGATGCTACGTTGGATCCTACAACACATGTCAAAATTATGCTAATGATCTTAAAAATTGCTGCCCAAAGTTGATCCTCACATACGGTGCCAAGTATGTTGATGGTGTTATGGTTGCTAACCATTTTGTGATTGGCATTATTGATAGCCTACCACTTAATGTTGCTGCATCTCTCCTTTGTGTTGGGATCACGTTATATAGCCCTTTGAGATATTTTGGAATTGACAAATCAGATCTGCATGTGGGTGTGGTTACTCTTGGTGGACTAGGCCAAAGTTTGCCAAAGCTCTTGGAGAAACAATATGTTGGGACTATATTGTTGTTACTTTTAATTTCTTTTGTTGAGTTCCTCTCTTGGTTTCAAGTTGGTATTGGTTAA 897 0.3902 MVFLALCKHLSLDPSVILADSLDNDIKSLYLKITTASGHGVNHSDEVLKWYVLSKTLAEDVAWKFVRESNIDMVTINPTMVIGPLLQLMQIVKTLHEVILRILGFGDLGCQGMRIPVGKHFLYTALGGVRPSSCLPIMIDIGTNNKKVANIIRVAARSWLCGLFLKVRDRVGVGCYVGSYNTCQNYANDLKNCCPKLILTYGAKYVDGVMVANHFVIGIIDSLPLNVAASLLCVGITLYSPLRYFGIDKSDLHVGVVTLGGLGQSLPKLLEKQYVGTILLLLLISFVEFLSWFQVGIG. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04057 298 Gene3D - 101 151 IPR037062 GO:0004471
Seca8g04057 298 Gene3D - 33 100 - -
Seca8g04057 298 Gene3D - 234 264 - -
Seca8g04057 298 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 101 149 IPR046346 -
Seca8g04057 298 SMART malic_2 55 166 IPR012301 GO:0004471
Seca8g04057 298 Pfam Malic enzyme, N-terminal domain 101 149 IPR012301 GO:0004471
Seca8g04057 298 PANTHER ALDEHYDE REDUCTASE 165 265 IPR047109 GO:0016616
Seca8g04057 298 SUPERFAMILY GroES-like 166 247 IPR011032 -
Seca8g04057 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 104 IPR036291 -
Seca8g04057 298 PRINTS Malic enzyme signature 127 149 IPR001891 GO:0004470|GO:0004471
Seca8g04057 298 PRINTS Malic enzyme signature 91 120 IPR001891 GO:0004470|GO:0004471
Seca8g04057 298 Gene3D - 165 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04057 Seca-Chr8 116124746 116125733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04057 165 254 Monolignol Biosynthesis Gene Families AT4G37990 44.000 1.22e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04057 K23232 - rcu:8261810 123.635