Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04053 ATGAGGAAGTGGACTGTCCCTTCCGCTCTCCTTCTACTCTGTCTTCTCTTTCTCTTTGCGGATCAAGGTCAAAAGTTTCAGGCGAATGCCGAGGGTAATTCCGAAGAGCTTGTAGATCCACCTAAGGTTGAGGACAAGATCGGTGCTGTTCCCAATGGCCTTTCCACCGATTCAGATGTGGCCAAGAGGGAGGCGGAGTCGATCTCGAAGAGATCGCTTCGAAGCAACGCGGAGAAGTTCGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATCATCATCAACTCTCTCTACAGTAATAAAGACATCTTCCTCAGGGAGTTGATCTCGAATGCTTCTGACGCATTGGACAAGATTAGGTTCCTCTCTCTCACGGATAAGGAGATTTTGGGTGAAGGTGACAACACCAAGCTTGAAATCCAGATTAAGTTAGACAAGGAAAGGAAAATTCTTTCAATTCGAGATAGAGGTATTGGTATGACGAAGGAGGATTTAATAAAGAATTTGGGGACCATAGCAAAATCTGGAACTTCAGCATTCGTTGAGAAAATGCAGACAAGTGGTGATCTCAATCTAATTGGGCAGTTTGGAGTTGGCTTCTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATTAGCAAACATAATGATGATAAACAGCATGTATGGGAGTCAAAAGCTGATGGAGCATTTGCAATTTCAGAAGATACTTGGAATGAACCACTGGGACGAGGAACTGAGATTAGATTACACCTCAAAGAGGAGGCTGGGGAGTACTTGGAAGAGTCTAAGCTGAAAGAGTTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAGGAGGTTGATGTGGAGGTTCCTGCTGATGAAGATGAGTCTAGTGATGAAGAGGATTCAAAAACAGCTGAAAGTAGCTCCAAGGAAGAAAGTGAAGATGAAGATGCTGATAAAAGTGAAGATGAAGAAAAAAAGCCTAAGACAAAGACAGTGAAGGAAACAACTTATGAATGGGAACTTTTAAATGACGTGAAAGCTATATGGCTGAGGAATCCAAAGGAGGTTACAGATGAAGAGTACACCAAATTCTACCACTCTCTTGCCAAGGATTTCAGTGATGAGAAACCTTTAGCATGGAGTCACTTTACTGCTGAAGGTGATGTCGAGTTCAAGGCAGTCCTGTTTGTGCCACCTAAGGCACCTCATGATTTATATGAGAGTTATTATAACTCGAACAAATCCAACCTGAAGTTGTATGTTAGACGAGTGTTTATTTCGGATGAATTTGATGAATTGTTGCCTAAGTATCTAAGCTTTTTGAAGGGCCTTGTTGATTCTGACACATTGCCACTTAATGTATCACGAGAAATGCTTCAACAACATAGTAGTCTAAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGTAGGATTGCTGATGAGGATCCTGATGAGATCACTGACAAAGAAAAGAAAGAAGAGACGTCCTCTGACAATGATGAGAAGAGAGGTCAATATGCTAAGTTCTGGAATGAGTTTGGGAAGTCCATTAAACTCGGTATCATTGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTACTCAGATTTGAGAGTACCAAGTCTGAGGGTAAATTGACATCTCTCGATCAGTACATATCAAGAATGAAAGCTGGACAGAAGGATATCTTTTACATAACTGGAACCAGCAAAGAACAACTGGAGAAATCTCCATTCCTCGAGCGGCTTAAGAAGAAAAATTATGAGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGATAAGAAGTTCCAAAATGTGTCCAAAGAGGGTCTGAAACTTGGGAAGGATGCAAAAGACAAGGAACTAAAGGAATCCTTCAAGGATCTTACTAAGTGGTGGAAAAATGCCCTTTCCAGTGAGAATGTTGATGATGTGAAGATATCCAGCCGATTGGATAACACACCTTGTGTAGTGGTGACATCAAAATATGGTTGGAGTGCCAACATGGAAAGAATCATGCAGTCGCAAACTTTATCAGATGCTAGCAAGCAAGCATACATGCGGGGCAAGAGGGTTCTTGAGATCAATCCTAGACACCCTATAATCAAGGAACTCCGAGAGAGAGTAGTAAAGAACCCTGAGGATGAGAGCGTGAAGCAAACAGCACAGCTGATGTACCAGACTGCACTCTTCGAAAGTGGTTTCCTGCTTAATGATCCCAAGGATTTTGCTTCCCGTATTTATGATTCAGTGAAGTCTAGCTTAGACATAAGTCCTGAAGCAACAGTTGAAGAGGAAGATGACAACGAAGTTGAGGCTGAAAGTGATGATGCAAAAGAAGAAGCATCTACTTCAAAGCCTGAAGCTGATGTGGTTAATGATGATGCTGATGTCAAGGACGAGTTGTAG 2469 0.4176 MRKWTVPSALLLLCLLFLFADQGQKFQANAEGNSEELVDPPKVEDKIGAVPNGLSTDSDVAKREAESISKRSLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNTKLEIQIKLDKERKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGAFAISEDTWNEPLGRGTEIRLHLKEEAGEYLEESKLKELVKRYSEFINFPIYIWASKEVDVEVPADEDESSDEEDSKTAESSSKEESEDEDADKSEDEEKKPKTKTVKETTYEWELLNDVKAIWLRNPKEVTDEEYTKFYHSLAKDFSDEKPLAWSHFTAEGDVEFKAVLFVPPKAPHDLYESYYNSNKSNLKLYVRRVFISDEFDELLPKYLSFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRRIADEDPDEITDKEKKEETSSDNDEKRGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESTKSEGKLTSLDQYISRMKAGQKDIFYITGTSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDAKDKELKESFKDLTKWWKNALSSENVDDVKISSRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLMYQTALFESGFLLNDPKDFASRIYDSVKSSLDISPEATVEEEDDNEVEAESDDAKEEASTSKPEADVVNDDADVKDEL. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04053 822 CDD HATPase_Hsp90-like 87 277 IPR020575 -
Seca8g04053 822 MobiDBLite consensus disorder prediction 778 822 - -
Seca8g04053 822 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 71 796 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g04053 822 SUPERFAMILY HSP90 C-terminal domain 648 770 IPR037196 -
Seca8g04053 822 SUPERFAMILY Ribosomal protein S5 domain 2-like 350 629 IPR020568 -
Seca8g04053 822 PIRSF HSP90_HTPG 52 816 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g04053 822 SMART HKATPase_4 100 257 IPR003594 -
Seca8g04053 822 Gene3D - 349 541 - -
Seca8g04053 822 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Seca8g04053 822 MobiDBLite consensus disorder prediction 798 813 - -
Seca8g04053 822 Hamap Chaperone protein HtpG [htpG]. 75 772 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g04053 822 Gene3D - 636 782 IPR037196 -
Seca8g04053 822 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Seca8g04053 822 MobiDBLite consensus disorder prediction 293 336 - -
Seca8g04053 822 FunFam Heat shock protein 90 68 303 - -
Seca8g04053 822 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Seca8g04053 822 Gene3D - 65 300 IPR036890 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Seca8g04053 822 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Seca8g04053 822 FunFam endoplasmin homolog 542 629 - -
Seca8g04053 822 FunFam Endoplasmin-like isoform B 636 782 - -
Seca8g04053 822 Pfam Hsp90 protein 259 801 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca8g04053 822 FunFam endoplasmin homolog 349 541 - -
Seca8g04053 822 MobiDBLite consensus disorder prediction 780 797 - -
Seca8g04053 822 Gene3D - 542 629 - -
Seca8g04053 822 MobiDBLite consensus disorder prediction 493 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04053 Seca-Chr8 116061500 116066600 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04053 K09487 - gmx:100779976 1363.59