Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04025 ATGTCTTCTGTTATAGTTTCTGCCGCCGCTACCTCCGCCGTGGGATCCTTTATTTCACGATCGCGGCAGCGGCGGCGGAGGTTGACGATGGCCCTCCGATCTGACGCCGTGTCTGTTGGCCCAACCAAAATGTTAACGAAACTGAAACACGAGTGTGCCACTCCTCTGCCTCTTCTTCAGCAAGTGGCCCACGCCATGTCTGCCGAAATGCGAGCTGGGCTTGCCGATGATGGTGGGCCTGGGCTTCCCATGATACCCACCTATGTTGACAATCTTCCTACTGGGAATGAGAAAGGGTTGTTTTATGCTTTGGATCTTGGTGGAACAAACTTCCGTGTGTTGAGGGTACAATTGGGAGGGAAAGATCAACGTGTCATTGCTACTGAGTTTGATCAAGTAACTATACCTCAGGAGCTCATGTTTGCTACATCTGAGGAGCTGTTTGATTTCATTGCTTTGGGGCTAGCAAAATTTGCTGCCAAGGAGGATGATAGATTTCATCTCTCACCTGGAAGAAAGAGAGAGATTGGGTTCACTTTTTCATTTCCTGTGAAGCAGACATCTATCGATTCTGGTATACTAATCAAGTGGACCAAAGGTTTTGCAGTCTCTGGAACAGCAGGAAGAGATGTGGTTGCTTGTCTGAATGAGGCTATGGAAAGGCAAGGACTAGATATGCGAGTTTCTGCTCTGGTGAATGATACTGTGGGAACATTGGCTGGAGCAGAATACTGGGACAATGATGTCATGGTTGCTGTCATTTTGGGCACTGGAACCAATGCTTGCTATGTTGAGCAGATCAGTGCCATTCCCAAGTTAAATGGACATGTCTCTTCTTCTGGGAAAATGATCATTAGTACTGAATGGGGGTCTTTCTCAAATGGTCTCCCTTTAACTGAGTTTGATAGAGAAATGGATGCTGCTAGCATCAATCCTGGTCATCAGATCTTTGAAAAGACAGTCTCAGGAATGTATCTAGGCGAAATTGTTAGAAGAGTGCTACTGAAAATGGCTGAAGAGGGTGGTTTGTTTGGAAAGTCTGTCCCACAACAACTATCTATGCCTTTCATACTCGGGACCCCAGATCTATGTGCCATGCAGCAGGACAAATCTGGTGATTTACAAGCCCTTGGGTCCCTCCTCTATGATAAAGCAGGGGTTGAATCCAATTTAAGCGCAAGAAAAACAGTTTTAGAGGTTTGTGACACTATTGTAAAGCGTGGTGGAAGCTTAGCTGGTGCAGGAATTGTGGGGATTCTGCAAAAAATGGAAGAGGACTCAAAAGGTCTCATCTTTGGGAAGAGAACTGTTGTTGCCATTGATGGGGGCTTGTACGAAAATTATCCTCAATACAGGGGTTACTTGCTAGATTCAGTAAAGGAGCTGCTAGGAACAGAGAAGTCAAACAATGTGGTGATAGAGCATTCTAAAGATGGATCTGGCATTGGGGCTGCTCTATTGGCAGCTTCAAATTCCATGTACAAGCATGACTTATAG 1497 0.4576 MSSVIVSAAATSAVGSFISRSRQRRRRLTMALRSDAVSVGPTKMLTKLKHECATPLPLLQQVAHAMSAEMRAGLADDGGPGLPMIPTYVDNLPTGNEKGLFYALDLGGTNFRVLRVQLGGKDQRVIATEFDQVTIPQELMFATSEELFDFIALGLAKFAAKEDDRFHLSPGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGTAGRDVVACLNEAMERQGLDMRVSALVNDTVGTLAGAEYWDNDVMVAVILGTGTNACYVEQISAIPKLNGHVSSSGKMIISTEWGSFSNGLPLTEFDREMDAASINPGHQIFEKTVSGMYLGEIVRRVLLKMAEEGGLFGKSVPQQLSMPFILGTPDLCAMQQDKSGDLQALGSLLYDKAGVESNLSARKTVLEVCDTIVKRGGSLAGAGIVGILQKMEEDSKGLIFGKRTVVAIDGGLYENYPQYRGYLLDSVKELLGTEKSNNVVIEHSKDGSGIGAALLAASNSMYKHDL. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04025 498 SUPERFAMILY Actin-like ATPase domain 42 247 IPR043129 -
Seca8g04025 498 Gene3D - 65 477 - -
Seca8g04025 498 PRINTS Hexokinase family signature 474 490 - -
Seca8g04025 498 PRINTS Hexokinase family signature 102 118 - -
Seca8g04025 498 PRINTS Hexokinase family signature 228 244 - -
Seca8g04025 498 PRINTS Hexokinase family signature 397 419 - -
Seca8g04025 498 PRINTS Hexokinase family signature 176 201 - -
Seca8g04025 498 PRINTS Hexokinase family signature 315 337 - -
Seca8g04025 498 PRINTS Hexokinase family signature 251 265 - -
Seca8g04025 498 Pfam Hexokinase 251 489 IPR022673 GO:0005524|GO:0005975|GO:0016773
Seca8g04025 498 FunFam Phosphotransferase 87 255 - -
Seca8g04025 498 ProSiteProfiles Hexokinase domain profile. 39 489 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Seca8g04025 498 SUPERFAMILY Actin-like ATPase domain 248 492 IPR043129 -
Seca8g04025 498 Gene3D - 87 488 - -
Seca8g04025 498 PANTHER HEXOKINASE 27 492 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Seca8g04025 498 Pfam Hexokinase 46 244 IPR022672 GO:0005524|GO:0005975|GO:0016773
Seca8g04025 498 CDD NBD_sugar-kinase_HSP70_actin 103 277 - -
Seca8g04025 498 ProSitePatterns Hexokinase domain signature. 176 201 IPR019807 GO:0004396|GO:0005524|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04025 Seca-Chr8 115441584 115445095 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04025 K00844 - gmx:100782127 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04025 8 115441584 115445095 Seca8g04025 8 115441584 115445095 ECH