Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04020 ATGGCTCTCCTCACTTTCTTGCCTGAACATTCCGACCCCAAAAAGGACCTCCCAAAACGCAAGCGAAAGAAGAAGCAGCAGCAGCAGCCACAGAAACAGCAACAGAAGGAGAAACCACCCTCTTCATGGGACCAAATCAAGAACCTCATCACCTGCAAACAGATCGAAGGGTCCAGAGTTCACGACCCTTCCAAAGTAGCTACAGCAGCAGGATACTCCAAGCTAGGTTCCTCTTGCAGCTCTATATGCAGCTTCAGAGATGTCGTTCATGGCAACACTCGTGTCGTTCACAGGTCTGATAACTCCTCTCCAGAGAGCAGTTCCCTCGGTCAGGAAACTGGCCTGCTGAGTAGAAAACCCGTCACTGCAGCCTCATCAACTCGCTCTGCCTCAGGGAAATCCAACGGTGTAGGAACCTACACGTCATCATCCTCTTCCAGAGGAATGCAATTCAGGAAGCTATCCGGCTGTTATGAATGTCACATGATCATTGACCCAAGCAGGCAACCAATTTCAAGGAGCACTGTGTGTTCTTGCTCTCAGTGTGGAGAAGTCTTCCCTAAGATAGAAAGCTTGGAGCTTCATCAAGCTGTTCGGCATGCTGTTTCGGAGCTGGGACCGGAGGATTCGGGTCGGAACATAGTGGAGATAATCTTCAAATCAAGCTGGATGAAGAAGGACAGCACGATGTGCAAGATCGAACGGATATTAAAAGTGCACAATACCCAACGCACGATCCAACGGTTCGAGGAGTGCAGGGACGCCGTGAAGTCGCGTGCAGTGAATAGCAGCAAGAAGAACCCGAGGTGTGCCGCGGATGGGAACGAACTTCTGCGGTTCCACTGCACCTCCTTAACGTGCGCACTAGGCGCACGTGGATCCTCCGCCTTGTGCGCCTCCATGCCTGGATGCGGAGTCTGCACTATCATCAGGCACGGTTTTCAAGGAAGCAAGTCCAAGGGAGTGAGAACCACTGCCAGTAGCGGTAGGGCCCACGACTCGGTCCAGTGCGGCGAAGGTTCCAGAAGGGCTATGCTGGTGTGCCGTGTCATTGCGGGTAGAGTGAAGCGCGTGGCGGAGGAGCCGCCGTTACCGTCGGAGGAGGAGTCTCTGTCTGCTGCTGCTGCTTCATCCTATGATTCTGTTGCAGGCAACGCTGGAATTTACTCGAATCTCGAAGAGTTGGTTGTTTTCAACCCAAGGGCTATCCTGCCTTGTTTCGTAGTCATTTACAAAGTGCATTCCTGTTGA 1251 0.5252 MALLTFLPEHSDPKKDLPKRKRKKKQQQQPQKQQQKEKPPSSWDQIKNLITCKQIEGSRVHDPSKVATAAGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETGLLSRKPVTAASSTRSASGKSNGVGTYTSSSSSRGMQFRKLSGCYECHMIIDPSRQPISRSTVCSCSQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWMKKDSTMCKIERILKVHNTQRTIQRFEECRDAVKSRAVNSSKKNPRCAADGNELLRFHCTSLTCALGARGSSALCASMPGCGVCTIIRHGFQGSKSKGVRTTASSGRAHDSVQCGEGSRRAMLVCRVIAGRVKRVAEEPPLPSEEESLSAAAASSYDSVAGNAGIYSNLEELVVFNPRAILPCFVVIYKVHSC. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04020 416 ProSitePatterns Zinc finger C2H2 type domain signature. 177 200 IPR013087 -
Seca8g04020 416 Gene3D - 201 413 - -
Seca8g04020 416 FunFam C2H2-like zinc finger protein 201 412 - -
Seca8g04020 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 205 IPR013087 -
Seca8g04020 416 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 41 411 - -
Seca8g04020 416 MobiDBLite consensus disorder prediction 1 44 - -
Seca8g04020 416 SUPERFAMILY ADP-ribosylation 202 412 - -
Seca8g04020 416 MobiDBLite consensus disorder prediction 96 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04020 Seca-Chr8 115312545 115315557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04020 1 413 C2H2 Transcription Factor Family AT1G75710 63.656 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g04020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04020 - - aprc:113874200 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04020 8 115312545 115315557 Seca8g04020 8 115312545 115315557 ECH