Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03992 ATGGCTTCCGTAGAAGAAAAGATTAAAATTGGTGGAGTTGGAGTTGGAGTTGGAGTTGGAGGAGGATTAGTTGTTGGGGGTCAAACTCAAACTCAAACTCTTGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTGTGGGGTCAGAAAGACTTTGAATTCGGAGTTATGGCATGCTTGTGCAGGCCCACTTGTATCCTTGCCTCAGGTGGGGAGCCTTGTATTTTACTTCCCTCAGGGACACAGTGAGCAGGTGGCAGCTTCCACTAGAAGAACAGCAACCTCCCAGATTCCAAACTATCCCAATCTTCCATCTCAGTTGCTGTGCCAAGTTAAGAATGTCACACTACATGCAGATAAGGAGACAGACGAAATCTATGCTCAAATGAGTCTCCAACCACTTAATTCTGTAAGCTTGGAAGTCTCAGAAAAAGAGGTGTTTCCTATATCTGATTTTGGGTCAAAGCATAGTAAACATCCCAGTGAATTTTTCTGCAAAACTTTGACTGCTAGTGACACCAGCACACATGGTGGCTTTTCTGTTCCACGCAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACCCAAGAACTTGTTGTTAGAGATTTGCATGATAATACCTGGACATTTCGACATATATACCGGGGTCAGCCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCAGGTGATTCTGTTCTTTTTATCAGAAGTGATGTGTCAATTGTTACAAGGGATGAGAAATCGCAACTAAGAGTTGGTGTGAGGCGTGTTAATCGTCAACAGACAACACTTCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATAGAAGCTCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCATTGGCTAAATACAGAAAAGCTGTATATGGGACTCAGGTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATACATGGGCACAATTGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAATGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTCTGACTTCAAGTCTAAAACGGCCATTACAATCTGGACTTTTGGATACAGAAAATGAGTGGGGAACTTTAAGAAGACCTTTTATGAAAGTTCCTGAAAATGGAATAATGGAGCTCTCAAACTCAATACCAAATATCTACCAAGAACAACTGATGAGGATGCTTTTTAAACCCCAAGTTATCAACAATAATGGAGCCTTTTTATCTGCCATGCAACAAGAATCTGCTGCTGCAAGAGGTCCCTTGCAAGAGATGAAGACCATACTGGCAACAGAAAACCAAAAAGTTCATCTTGCAAGTACAGAAAGCATACCACTAAGAAATCTACATTCTCAATCTATCCCTGACCAGCCTAATGCCTTAAACATGCATGCATTGTTGAAAAATGATCAACCTGAAAAACTGCATCCTCTGGCCAAAATTGAGAATCATCTGCCTTCTGGAACAGTAACTGACAAGTCAAAATTAGAGCCTGAGATGATGCCTAATCATGTGTTTGATTTCCCTTCCATGGAAGGCTGCAACACTGATAAAGTGGCTACAAATCCTGTTAATCCCCAAAGCTTAGCAAGCCAATTGACATTCCATAATCAAAACCAGAATCCGTTACTCACTCAATCTAGTCAATGGCCTATGCAGCCTCAATTAGAATCATCAATATCTAATCCTCAGCTGATTGATGTGGCTCAATCTGACCCTGCTATTGTAAATGGCATGCTTCCTCAGCTAGATATTGATGAATGGATGATGTATTCTTCTTGCCAACCTTTTGCTGGGCAAAACAGATCAACTGGGCCTTTATCAGATTTGCAAGAACATACCTCACTTCAACCACAAGCAGTGAATCCCTCTTTACCTTCAATGAACCAAGAAGTTTGGGATCATTATGTCAAGAATATGAAGCTTTTATCTCAAGCAGATCAGCTAACATCCCTCTGTCAGCCAGGGCTATATGGTGTCAATGGTATATCTAGTTCAAACAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAACAGTGTAAGCACCACCATGGTTGATCCATCTACCTCAAGTACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGATTTTCAGCATCCACAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAAGATGGCCAGTCCCAGATAACCACTGCAAGTCTAGCAGAGTCACATGCCTTTTCTCTTAGAGACAACTCAGGTGGTACATCTTCAAGCCATGTTGATTTTGATGAAAGCAGTTTTCTGCAGAATAATTCATGGCAGCAAGTAGCTGCACCACCCATCCGAACCTACACCAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGCTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGATACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGACAGGGAATTTGTGGGGTGTGTCCGCTGTATCAGAATTTTATCACCTTCAGAGGTTCAGCAAATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCGTTGCAAGGGATCAATGTTTGA 2898 0.4231 MASVEEKIKIGGVGVGVGVGGGLVVGGQTQTQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVKNVTLHADKETDEIYAQMSLQPLNSVSLEVSEKEVFPISDFGSKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRSDVSIVTRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSSFTIFYNPRACPSEFVIPLAKYRKAVYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLDTENEWGTLRRPFMKVPENGIMELSNSIPNIYQEQLMRMLFKPQVINNNGAFLSAMQQESAAARGPLQEMKTILATENQKVHLASTESIPLRNLHSQSIPDQPNALNMHALLKNDQPEKLHPLAKIENHLPSGTVTDKSKLEPEMMPNHVFDFPSMEGCNTDKVATNPVNPQSLASQLTFHNQNQNPLLTQSSQWPMQPQLESSISNPQLIDVAQSDPAIVNGMLPQLDIDEWMMYSSCQPFAGQNRSTGPLSDLQEHTSLQPQAVNPSLPSMNQEVWDHYVKNMKLLSQADQLTSLCQPGLYGVNGISSSNNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPSTSSTILDEFCTMKDRDFQHPQDCMVGNLSSSQDGQSQITTASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNSWQQVAAPPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWDREFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINV. 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03992 965 Gene3D - 855 948 - -
Seca8g03992 965 ProSiteProfiles PB1 domain profile. 858 943 IPR000270 GO:0005515
Seca8g03992 965 SUPERFAMILY DNA-binding pseudobarrel domain 156 303 IPR015300 -
Seca8g03992 965 Gene3D - 164 275 IPR015300 -
Seca8g03992 965 SUPERFAMILY CAD & PB1 domains 871 927 - -
Seca8g03992 965 CDD B3_DNA 165 274 IPR003340 GO:0003677
Seca8g03992 965 FunFam Auxin response factor 853 948 - -
Seca8g03992 965 ProSiteProfiles B3 DNA-binding domain profile. 166 276 IPR003340 GO:0003677
Seca8g03992 965 FunFam Auxin response factor 164 276 - -
Seca8g03992 965 SMART B3_2 166 276 IPR003340 GO:0003677
Seca8g03992 965 FunFam Auxin response factor 338 410 - -
Seca8g03992 965 Pfam Auxin response factor 300 383 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca8g03992 965 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 949 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca8g03992 965 Pfam AUX/IAA family 851 946 IPR033389 -
Seca8g03992 965 Gene3D - 338 410 - -
Seca8g03992 965 Pfam B3 DNA binding domain 166 259 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03992 Seca-Chr8 114595806 114601026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03992 33 963 B3 DNA Binding Superfamily AT1G19850 57.592 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca8g03992 AUX_IAA 4.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03992 K14486 - gmx:100813003 1614.36