Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03990 ATGGGTGCGGATAATCCTGATGATGGATTGAAGAAGCTGGAATACTTGTCGCTGGTGTCCAAGGTGTGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAGGTCCTCGCCGAATTCATCACCGATTTGGGTCGCGCATCGGAAAACGTCGAGGAATTCGATGCGAAACTGAAGGAGAATGGTGCGGAGATGCCGGATTACTTTGTCCGAACCCTCCTCACCATCATTCACGCCATTCTTCCTCCCAAACCTAAGAAGGAGAAGGAGAAAGAGAAAGACAGCACCGCCTCAAAGCCCAAATTCAAGGCTCTGGCCATTGCGGACGATAGGGACCGTGTCAAGGAGCTTCAGAAGGAAATAGAAACGGAGGCCAGGCAAAAGGAAAAGCACAAACCAGCAGATGAAGATGACGGGTACAGAGATAGGGACAGAAGAGATAGACGCAGAGACAGGTACGATAGAGATGAGAGGTATAGAGACAGGGATGATGGAGATGAGAGAAGGGATTATAGAAGGGGAAAAGATAGGGATAGGGATAGGGATAGAGATAGAGAGAGAGATAGATATGACAGGCGCAGGAGAGATGTGTATGAAGAGGATGAACGTGGGAGGGAGAATGGTGATGGGGATAGTAATAGGAAAGGTCGCAGAGATCCTAGACATGTGTCTAGTGAACCTGAGTTGTATATGGTTTATAAAGGAAGGGTGTCAAGGGTTATGGATACTGGGTGCTTTGTTCAGTTGGATGATTTTAGAGGGAAGGAGGGTTTGGTGCATGTTTCTCAGATTGCTACTAGAAGGATTAGTAATGCTAAGGATGTTGTCAAGCGGGATCAGGAGGTTTATGTGAAGGTGATATCTGTTTCTGGTCAGAAGTTGAGTCTTTCCATGAGGGATGTTGATCAACATACAGGGAAGGATCTTCTTCCGTTGAAGAAGAGCTCAGAGGATGATGCTTTCCGGATGAATCCACAGGATTCAAAGGATGGGCCGGTTGCCAGGACGGGGCTTTCAGGTATCAGGATTGTGGAAGAGGATGATGTTGGTTCCTCGCGGAGACCTTTGAAGAGAATGAGCTCTCCGGAGAGATGGGAAGCAAAACAGTTGATTGCTTCAGGTGTTTTGAGTGTTTCAGAGTATCCCACTTATGATGAGGAGGGAGATGGATTGATGTACCAAGAGGAAGGTGCTGAGGAAGAGCTTGAGATCGAGATGAATGAGGATGAACCTGCCTTTTTGCAAGGGCAGAGCAGATACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTTTGGGTCGTGCTGCTGCACTCCAGTCTGCACTTATAAAGGAACGGAGGGAAGTACGAGAACAACAACAACGTACTATGCTTGATTCAATTCCAAAGGATCTCAATCGTCCTTGGGAAGACCCCATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAGGAGCTCAGGGGTGTTGGCTTATCTGCCTATGATATGCCAGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAAAGGTCGAAGCTTTCTATTCAGGAACAGAGGCAAAGTTTGCCAATTTACAAGTTAAAGAAAGAATTGATTCAGGCTGTCCATGATAATCAAGTACTGGTGGTGATTGGTGAAACTGGTTCAGGTAAGACTACTCAAGTTACACAGTATCTTGCTGAAGCGGGTTATACCACAAAAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTCGCGGAAGAATTTGGTTGTAGATTAGGTGAGGAAGTTGGTTATGCCATTCGATTTGAGGACTGCACTGGACCTGATACCGTAATCAAGTACATGACAGATGGTATGCTTCTTAGAGAAATATTGGTTGATGAGAATCTATCACAGTATTCTGTTATCATGCTTGATGAAGCCCATGAAAGAACTATTCATACTGATGTTCTTTTTGGACTGCTGAAGCAGCTAGTGAAGCGAAGACCTGAATTGCGATTGATTGTCACATCTGCTACTCTGGATGCTGAGAAATTTTCAGGATATTTCTTTAACTGTAACATCTTCACAATTCCTGGGAGAACTTTTCCTGTGGAGATACTTTATACTAAACAACCAGAAAGTGATTACTTAGATGCAGCCTTAATCACTGTCTTACAAATTCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTGACCGGTCAAGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGAGAATGAAGGGATTAGGTAAGAATGTTCCAGAGCTAATCATTTTACCTGTTTATAGTGCCCTTCCAAGTGAAATGCAGTCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATAGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTAATTGATCCGGGATTCGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTGGACTCTTTGGTGATAACTCCAATTTCACAGGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACCGGACCTGGGAAGTGTTATCGCCTCTATACTGAGAGTGCTTATAGGAATGAGATGTCTCCTACTACAATTCCAGAGATTCAAAGGATAAATCTTGGGACGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCACCATCACCCCAAGCACTTATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCATTGTCCAAGATGCTGCTTGCTAGTGTAGACCTTGGATGCAGTGATGAGATTTTGACCATAATCGCCATGATCCAGACTGGCAATATTTTTTACAGGCCCAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAAGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCCTGGTGTTTTGAGAACTTCGTTCAATCTCGATCCTTGAGAAGAGCACAGGATGTCAGGAAACAGCTTCTTACCATCATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAACTTCACCAAGATCAGGAAGGCCATCACTGCAGGATTCTTTTTTCATGCAGCTAGAAAGGACCCCCAGGAAGGTTACAGAACCCTAGTTGAGAACCAGCCTGTATATATCCATCCAAGTTCCGCATTGTTCCAGAGACAGCCAGACTGGGTCATATACCATGAGCTTGTGATGACAACTAAGGAATATATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATACCACGAACCAAATTCATGGCGTTTGAGTAAACGTCGTGCATGA 3549 0.4466 MGADNPDDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGRASENVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKKEKEKEKDSTASKPKFKALAIADDRDRVKELQKEIETEARQKEKHKPADEDDGYRDRDRRDRRRDRYDRDERYRDRDDGDERRDYRRGKDRDRDRDRDRERDRYDRRRRDVYEEDERGRENGDGDSNRKGRRDPRHVSSEPELYMVYKGRVSRVMDTGCFVQLDDFRGKEGLVHVSQIATRRISNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDAFRMNPQDSKDGPVARTGLSGIRIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDEEGDGLMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGTTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA. 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03990 1182 Gene3D - 225 310 IPR012340 -
Seca8g03990 1182 Pfam S1 RNA binding domain 231 297 IPR003029 GO:0003676
Seca8g03990 1182 CDD SF2_C_RHA 706 867 - -
Seca8g03990 1182 FunFam ATP-dependent RNA helicase DHX8 225 310 - -
Seca8g03990 1182 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 644 653 IPR002464 -
Seca8g03990 1182 SUPERFAMILY Nucleic acid-binding proteins 226 302 IPR012340 -
Seca8g03990 1182 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 882 925 - -
Seca8g03990 1182 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1067 1142 IPR011709 -
Seca8g03990 1182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 539 702 IPR014001 -
Seca8g03990 1182 Coils Coil 440 460 - -
Seca8g03990 1182 SMART S1_6 228 299 IPR022967 -
Seca8g03990 1182 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 705 879 - -
Seca8g03990 1182 CDD GH2-like_DHX8 13 80 - -
Seca8g03990 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 1052 IPR027417 -
Seca8g03990 1182 CDD S1_DHX8_helicase 230 306 - -
Seca8g03990 1182 Gene3D - 904 1003 - -
Seca8g03990 1182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 900 IPR001650 -
Seca8g03990 1182 Pfam Helicase conserved C-terminal domain 727 859 IPR001650 -
Seca8g03990 1182 ProSiteProfiles S1 domain profile. 230 299 IPR003029 GO:0003676
Seca8g03990 1182 Gene3D - 501 704 IPR027417 -
Seca8g03990 1182 SMART ha2_5 920 1010 IPR007502 GO:0004386
Seca8g03990 1182 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 495 704 - -
Seca8g03990 1182 PANTHER ATP-DEPENDENT RNA HELICASE 459 1144 - -
Seca8g03990 1182 MobiDBLite consensus disorder prediction 82 223 - -
Seca8g03990 1182 Coils Coil 107 127 - -
Seca8g03990 1182 SMART ultradead3 527 711 IPR014001 -
Seca8g03990 1182 SMART helicmild6 755 859 IPR001650 -
Seca8g03990 1182 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 904 1003 - -
Seca8g03990 1182 Pfam Helicase associated domain (HA2) 921 1009 IPR007502 GO:0004386
Seca8g03990 1182 Gene3D - 705 879 IPR027417 -
Seca8g03990 1182 CDD DEXHc_DHX8 524 702 IPR044762 GO:0000398|GO:0003724|GO:0005524
Seca8g03990 1182 Pfam DEAD/DEAH box helicase 535 685 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03990 Seca-Chr8 114579548 114583492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03990 K12818 - mnt:21395429 1924.83