Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03989 ATGTTGGCAGCACAGAGGCTAGTCCAAGTAACTCTCCAGCACCCGTTATATCCGTTGGATTATTCGTTTTCATCAATTGATGAGGGATGGGTAATTATAAAGCTTAAAAAAAAATCCAAGGTGATGAAGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTCAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAACTACACGAACTTGTAAAACCTGACAAAGCAATTGTAGACTATAGAACAGAGATTACTGGTGTCTCTTCACAAGATCTAGAGTCAGTGAGTTGCTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTAGCAAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGAGTTCTGAAGATAGATCATGTAAGAGTGGTTGACACTGCATATATCTTCCACTCCTTGGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCCATGAAGTTCGGGAAAAGGGTGCTCCACATAACTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAAGATCAAACACGGTGTTGATAGAGAATTTCCATTAGCGCTGGTTCAAGAGCCTGTTCCAGAAAGTGAGACTGCAAAGCTGCTTCTTCATGGGATACCAGCCACTGTGAACAGTGAAACACTACATGAAATTGTTCCTGGAGACTTCACAATAGAACCAAAGCCTTCTAGGAAAGGTCCACGAGGAAAATATTCTGCCTTAGCCATCTTTAAGAACCCACAAGAGGCACATGCTGCCTATGAAAATGTCCATGGCGACCAAACAAAGGATTCGTTTGGACGTCCTCAGAAACTTGTCACATTTCAGCTAAGCGCAGACAGGACTGTCAGTCTGTATGTTCGGAAAATGACAACTGGTGAACCCCATGACCCAAATCCATCTAAGAGAGCTTTACAAGTGGATAATGCAGTTGATGTTTCCAAGAAAGCAAAAACGGATCCTGAAATTGAAGAGGCCCTAGGCTCTTCTAAGGGTGACATTGGCACCTACTTGAATGAGATTGAAGCGCTGAATCAACGACTGAAGCAAAATGATTTAGAGATTGAATCATTGAGGGAACAATTGAGGCAAAAAGATTTTGAAATCGCCATGCTGCATAAAATGGTAGGCTCCATAAAAAAGCGAAAATAA 1230 0.4138 MLAAQRLVQVTLQHPLYPLDYSFSSIDEGWVIIKLKKKSKVMKSTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHELVKPDKAIVDYRTEITGVSSQDLESVSCSLADIQKSMKKLLANGTILVGHSLHNDLRVLKIDHVRVVDTAYIFHSLDGSIHRRPSLNSLCQAVLGHEVREKGAPHNCLDDACAAMKLVLAKIKHGVDREFPLALVQEPVPESETAKLLLHGIPATVNSETLHEIVPGDFTIEPKPSRKGPRGKYSALAIFKNPQEAHAAYENVHGDQTKDSFGRPQKLVTFQLSADRTVSLYVRKMTTGEPHDPNPSKRALQVDNAVDVSKKAKTDPEIEEALGSSKGDIGTYLNEIEALNQRLKQNDLEIESLREQLRQKDFEIAMLHKMVGSIKKRK. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03989 409 SMART exoiiiendus 46 207 IPR013520 -
Seca8g03989 409 SUPERFAMILY Ribonuclease H-like 47 203 IPR012337 -
Seca8g03989 409 Coils Coil 367 391 - -
Seca8g03989 409 Gene3D - 42 211 IPR036397 GO:0003676
Seca8g03989 409 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 42 214 IPR047021 GO:0004527
Seca8g03989 409 FunFam Small RNA degrading nuclease 3 42 216 - -
Seca8g03989 409 CDD REX1_like 48 199 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03989 Seca-Chr8 114567351 114574119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03989 23 213 C2H2 Transcription Factor Family AT3G27970 29.817 6.91e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03989 K14570 - gmx:100785565 607.06