Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03986 ATGGAAGGTGTTGATCAAAGTGGTAAGCAACGAAACAATTATGCATTTCCCAGACCCCCAAATCGATTGAATGCTATGCCTATCAATCAAATGGGTGCTACTGAGAATCATAAACCCTCTGGTATACCACCCTCTCACCCTAATACCAATACCTCACCTTCATCTCCTTACCCCCAATTTATGGCCTCTCAATCCCATTCTGGTTCCCAAAGATTGCGTTCTCCCAATTTGAGCCCAGGCTCATCCTCATCCCATTCAAGGTCTTTGTCTCAACCCCCTTTTTTCTCTCTGGATCCCTTGCCTCCATTGAGTCCTTCCCCTTATCGAGAACCCTTGGCTGCCACCTCCTTTTCTGACTCAATTTCAACAAATGTGCCTATGGAGGAAACCTTGGCTACCTCTCATGCCCCTTCCCCTAACCGTGGTCATGCTCTTCAGCTTGGTCATTGTCTTCCCCCTCGTAAAGGACACAGGCGTTCTAGCAGTGATTCCCCTTTAGGAATCTCGGATTTTATTCAGTCTGTCCCTCAGTTGGTTCCCCCTGGGGCGTGGAGTGATCGCCCCAATTCAGCTTCTAGGGGAGAAAACTGTGGTTTTGAGAAGCCAATTCAGTTGGTGTTGAAGGCGCCGTATATGGATACGAACCGTGTTGATGGCTTTAGTGGAGAACCTATGGATCAGAAGAAAGAGGATGATTCCCTGGATGATTTATTTAGCGCATACATGAATTTGGACAACATTCATAGTATGAATTTTTCTGGAATGGAAGATAAGGATTTGGATAGCAGAACTAGTGGTTCCAAGACAGTTGAAAGCAGTGACAATGAAGTTGACAGTCATGCGAATGGAAAAGCAACCGGTGCTCAGGGGGCAAGTTCAAGCTGTTCGGATGAGCGGAGGGAAGGAGTTAAGAGGAGTTCTAATGGAGATATTGTGCCTGGTGCCCGGCACCGGAGAAGTTTCTCATTGGACAGTTCTATAGAAAGTTTTCGTATTGAAGATGGATCACCTAAGCTTCCTCCTTTACAAAATAGAGTTGGTCAACACTCGCCTAGCAATTCAATAGATGGTAAAACATCTGGAATCGGCATGGAGTTTGGAAATGGTGAATTCAACTCAGAGGAGATAAAGAAAATAATGGAAAATGATAAACTTGCAGAAATTGCCATGTCTGATCCCAAGCGTGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTCAAGGTCCAAACTCTTCAGACAGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGGATAATACAGAGCTTAAAAATGAGAATAACGAATACAAATTGAGGCTTCAGTCCTTGGAACAACAGTCCCAACTGAAAGATGGTATGTATATGCATTTACCTTGTACTTTATATTTTAGTTAG 1452 0.4415 MEGVDQSGKQRNNYAFPRPPNRLNAMPINQMGATENHKPSGIPPSHPNTNTSPSSPYPQFMASQSHSGSQRLRSPNLSPGSSSSHSRSLSQPPFFSLDPLPPLSPSPYREPLAATSFSDSISTNVPMEETLATSHAPSPNRGHALQLGHCLPPRKGHRRSSSDSPLGISDFIQSVPQLVPPGAWSDRPNSASRGENCGFEKPIQLVLKAPYMDTNRVDGFSGEPMDQKKEDDSLDDLFSAYMNLDNIHSMNFSGMEDKDLDSRTSGSKTVESSDNEVDSHANGKATGAQGASSSCSDERREGVKRSSNGDIVPGARHRRSFSLDSSIESFRIEDGSPKLPPLQNRVGQHSPSNSIDGKTSGIGMEFGNGEFNSEEIKKIMENDKLAEIAMSDPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNTELKNENNEYKLRLQSLEQQSQLKDGMYMHLPCTLYFS. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03986 483 Pfam bZIP transcription factor 394 452 IPR004827 GO:0003700|GO:0006355
Seca8g03986 483 Gene3D - 393 444 - -
Seca8g03986 483 Coils Coil 438 465 - -
Seca8g03986 483 MobiDBLite consensus disorder prediction 279 296 - -
Seca8g03986 483 MobiDBLite consensus disorder prediction 343 359 - -
Seca8g03986 483 MobiDBLite consensus disorder prediction 27 93 - -
Seca8g03986 483 MobiDBLite consensus disorder prediction 111 140 - -
Seca8g03986 483 MobiDBLite consensus disorder prediction 255 319 - -
Seca8g03986 483 FunFam Transcription factor VIP1 isoform A 392 454 - -
Seca8g03986 483 Coils Coil 410 430 - -
Seca8g03986 483 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 392 455 IPR004827 GO:0003700|GO:0006355
Seca8g03986 483 CDD bZIP_plant_RF2 395 467 IPR044759 GO:0003700|GO:0006355
Seca8g03986 483 MobiDBLite consensus disorder prediction 1 166 - -
Seca8g03986 483 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 67 476 - -
Seca8g03986 483 MobiDBLite consensus disorder prediction 332 367 - -
Seca8g03986 483 SUPERFAMILY Leucine zipper domain 394 450 IPR046347 GO:0003700|GO:0006355
Seca8g03986 483 SMART brlzneu 390 454 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03986 Seca-Chr8 114535086 114537863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03986 41 472 bZIP Transcription Factor Family AT4G38900 45.652 2.50e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g03986 bZIP_1 9e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03986 - - gmx:100810841 632.869