Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03980 ATGTTTGCCAATAGAAAGGCACATGATTGGAATAGTAGTCAGGATATTGTAAATGGAGGAGATGATCTTAACAAGCAGTTAACGGTGTCAAAGGCTAATTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGTATATGATGAGTCAACCATGCCAGCGCCAGTGTGTTCTTGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCCTGTTGCACAACCACCTGA 246 0.439 MFANRKAHDWNSSQDIVNGGDDLNKQLTVSKANWKAQDLALNQVVYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTT. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03980 81 SMART GAGA_bind_2 1 81 IPR010409 -
Seca8g03980 81 PANTHER - 18 81 IPR010409 -
Seca8g03980 81 Pfam GAGA binding protein-like family 20 81 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03980 Seca-Chr8 114497274 114497519 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03980 21 81 BBR or BPC Transcription factor family AT5G42520 69.841 2.26e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca8g03980 GAGA_bind 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03980 - - gmx:100783502 151.369