Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03978 ATGGATGATCGTGAAAACGGAAGACACAAAGTAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCCATTATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCAATCTTGCAACGAGATACTGCAATTGTTGAACGAAACAATGCATTAATGGAACGGGATAATGCAATTGCAACCCTTAAGTTTAGAGAAAAATCCTTGACCAGTGGGAGTATGTCATCATGCCCTCCAGGATGCCAAATCTCACGGGGAGTCAAGCATATACATCATTTGCAGCAACAGGTAAACCATTTACCCAATATGGTTGATGCTTCTTACAGCACACGGGAAATGCACACGAGTGATGCTCTCCCAGCTGCACCCATTCCTTTAGAGGCTGGGAAGTCTCGGCAGGCCAAGCGACCAAAGGAAGGTAAGTCAGTTTCACCTAATAAGAAGACTCCAAAAACTAGAAAGGTCAAGAAGGAGAGTGAAGATTTAAATAAGATGATGTTTGCCAATAGCAAGGCACATGAGTGGAAGAGTAGTCAGGAGATCGTAAATGGAGATGATCTTAACAAGCAATTAGAGGTGTCAAAGGCTGACTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGCATATGATGAGTCAACCATGCCAGCCCCAGTGTGTTCTTGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCTTGTTGCACAACCACCTTATCAGTGTATCCCCTTCCAGCTGTGCCCAACAAGAGGCATGCTCGGATAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAGTAAACTGCTTAGCCGGCTTGCAGCAGAAGGGCATGATCTGTCAAACCCAGTTGACCTTAAAGACAATTGGGCCAAACATGGGACAAATCGATATATCACAATAAAGTAG 1005 0.4488 MDDRENGRHKVDQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIVERNNALMERDNAIATLKFREKSLTSGSMSSCPPGCQISRGVKHIHHLQQQVNHLPNMVDASYSTREMHTSDALPAAPIPLEAGKSRQAKRPKEGKSVSPNKKTPKTRKVKKESEDLNKMMFANSKAHEWKSSQEIVNGDDLNKQLEVSKADWKAQDLALNQVAYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03978 334 SMART GAGA_bind_2 1 334 IPR010409 -
Seca8g03978 334 PANTHER - 1 334 IPR010409 -
Seca8g03978 334 MobiDBLite consensus disorder prediction 157 172 - -
Seca8g03978 334 MobiDBLite consensus disorder prediction 137 185 - -
Seca8g03978 334 Coils Coil 48 68 - -
Seca8g03978 334 Pfam GAGA binding protein-like family 1 334 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03978 Seca-Chr8 114462965 114466386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03978 62 334 BBR or BPC Transcription factor family AT5G42520 61.644 3.56e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca8g03978 GAGA_bind 6.4e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03978 - - gmx:100783502 574.318