Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03976 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAGCAGGGATTTCATGGGGGCTCATAAATTTGCTCTTAAAGCTCAGCAGTTGTATCCTGATCTGGAAAATATAGCTCAAATGCTTGTTGTTTGTGATGTGCATTGCTCTGCTGAGATGAAATTGTTCGGCAATGAGATGGACTGGTATGAAATTCTTCAACTGGAACGGATGGCTAATGATGCAATGATTAAAAAGCAGTACAGAAAGTTCCCACTCCAACTTCATCCCGACAAAAACAAGTTTGCTGGTGCAGAAGCCACATTTAAGCTGATTGGGGAATCTCAAAGAGTACTTTTAGACAGAGAAAAACGATCTCAGTTTGACATGAAGTGCAGGGTTCCAATGAACAAAACTGCTATGCCCTTCATTGCATATAATGTGGATAGGAAAAGTACATCATCAGCAACTAATTCAAGTCAGCAAGCTTTTGGCCAGCAAAAAGATGGTTTGAATCATGATCCTTCCAAGATGGGTGGATCTCAAGGCAACTTGCATGCTGAGAAGTCCAATACTGGGCTTCACGAGAAGAAAGGCCCCGTTGATGTCTCTGGAAAGCCACATGGAAAGAGGAAGAGGAATAAGGTGGCAGAATTTGGTCAAAGTTTTGATTTTACGAGCAGCACTGATTCTGAAGGTGGTAGGGTTGTTGGTGAGGATGGTGCTCCTGGTGTAGAAAATCATTCAACTTACAGAGAAGAGCAACTACGCAGATCTGCACGACAAAAGCATAAGGTTTCCTACAAGGATAATGTGAGTGACAATGATGATGACCTCTTAAGACCTTCAAACAGGGCCTCCAAAGCAACAAATCTTCCAATTGCTTATGTCTATTTCGAAGCAGAGTTCAGTGACTTTGACAAGGACAAGAAAAAAGAATGTTTTGTGGCAGGGCAGATTTGGGCTGTTTATGATACAACACATGGCATGCCTAGATTTTATGCTTTAACCAGGAAAGTTCTATCTCCTAGATTCAAGTTGCAGATAACATGGTTGGAATCACATCTAGGTAACAATGATGAAATGAAGTGGGTAAATGAGGATATGCATGTTGCATGTGGGAAATATAAACTTGGTGACACTAACATCGTGAAAGATCATATGATATTCTCTCATGTGGTTACGTGTGAAAAGATTGGCTGCAATACTTTCAAAGTGTATCCTAGAAAGGGAGGAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGTACATGGATGCAGAATCTCATAAGCAATTCTCTCACAGGATTCCCTCTTTCAAAATGACTGGTCAGGAAGGAGTAGATGTTCCTGTAGGATCTTATGAACTTGATCCTGCAGCTTTGCTGATGAATCTTGAAGAGATTGTTGTTCCTGAAAATTTGGATGTGAAGTTTGGTCACAATTCTGGCACTGAGAATGCAAGATCTTCAGAAAGATCAAAACCCCCAATGACATCTGACAGATAG 1509 0.4082 MDCNKEEALRAKDIAEKKMESRDFMGAHKFALKAQQLYPDLENIAQMLVVCDVHCSAEMKLFGNEMDWYEILQLERMANDAMIKKQYRKFPLQLHPDKNKFAGAEATFKLIGESQRVLLDREKRSQFDMKCRVPMNKTAMPFIAYNVDRKSTSSATNSSQQAFGQQKDGLNHDPSKMGGSQGNLHAEKSNTGLHEKKGPVDVSGKPHGKRKRNKVAEFGQSFDFTSSTDSEGGRVVGEDGAPGVENHSTYREEQLRRSARQKHKVSYKDNVSDNDDDLLRPSNRASKATNLPIAYVYFEAEFSDFDKDKKKECFVAGQIWAVYDTTHGMPRFYALTRKVLSPRFKLQITWLESHLGNNDEMKWVNEDMHVACGKYKLGDTNIVKDHMIFSHVVTCEKIGCNTFKVYPRKGGTWALFKNWDIKWYMDAESHKQFSHRIPSFKMTGQEGVDVPVGSYELDPAALLMNLEEIVVPENLDVKFGHNSGTENARSSERSKPPMTSDR. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03976 502 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca8g03976 502 MobiDBLite consensus disorder prediction 480 494 - -
Seca8g03976 502 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 432 473 - -
Seca8g03976 502 MobiDBLite consensus disorder prediction 151 168 - -
Seca8g03976 502 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca8g03976 502 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca8g03976 502 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca8g03976 502 MobiDBLite consensus disorder prediction 480 502 - -
Seca8g03976 502 Pfam Domain of unknown function (DUF3444) 297 431 IPR024593 -
Seca8g03976 502 SMART dnaj_3 66 123 IPR001623 -
Seca8g03976 502 MobiDBLite consensus disorder prediction 189 206 - -
Seca8g03976 502 Gene3D DnaJ domain 64 178 IPR036869 -
Seca8g03976 502 CDD DnaJ 67 120 IPR001623 -
Seca8g03976 502 Pfam DnaJ domain 67 128 IPR001623 -
Seca8g03976 502 MobiDBLite consensus disorder prediction 151 283 - -
Seca8g03976 502 MobiDBLite consensus disorder prediction 245 282 - -
Seca8g03976 502 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03976 Seca-Chr8 114379405 114381506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03976 4 128 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 43.846 2.57e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03976 - - rvl:131322761 362.459