Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03962 ATGAAGATCCAGTGCGACGTGTGCACCAAAAACGAGGCTTCGGTATTCTGCACTGCCGACGAAGCCGCACTCTGTGACGGCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCTGCAAAACAATACCCTCTCTGCGATATTTGCCAGGAGAGAAGAGCTTTCCTGTTCTGTCAGCAGGACAGAGCGATTCTTTGCAAAGAGTGTGACTTCCCTGTTCATTCTGCCAACGAGCACACCCAGAAGCATGATAGGTTCCTTCTCACTGGTGTTAAGCTCTCTTCTTCTGCTAATCTTTATTCAACAACAACACCTTCCAATTCCGTTTTGACCACTGCTTCTGATTCCAAGTCAAAGCCCCCTTCTGTTCACTCCTCTTCTAACCTTTCACATCAACCTTTGATCGCCAAGACCACTCCTTCACCTCCTTCTTCCACAACCCTTAACAAGATTGGGGTAACTATGGAAGGAACTGGTTCCACAACTACTAGTAGCATATCCGAGTACTTGATAGAGACTCTCCCTGGCTGGCAGGTTGAAGACCTTCTTGATTCCTATTCTGTTCCTTTTGGTTTCTCTAAGAGTGATGACATGTTACCACTGTTTGATGCTGGTATTGAGGGGAATCTTAGTTCCTTCTCGCCAGAGGGTATGGGGATCTGGGTTCCTCAAGCACCACCTCCTCTGTATTCTTCACAAATGGATCGGGTGATTGGGTACAGTGAGACAAAGGAAGCCAACAACATGAAAGGCAACAGCAGATCAAGGTTGAGAGATGATAATTTCACTGTTCCACAGATTAGTCCTCAGTCAAATTCCAAGAGAACCAGATATCTATGGTAG 879 0.4733 MKIQCDVCTKNEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSAKQYPLCDICQERRAFLFCQQDRAILCKECDFPVHSANEHTQKHDRFLLTGVKLSSSANLYSTTTPSNSVLTTASDSKSKPPSVHSSSNLSHQPLIAKTTPSPPSSTTLNKIGVTMEGTGSTTTSSISEYLIETLPGWQVEDLLDSYSVPFGFSKSDDMLPLFDAGIEGNLSSFSPEGMGIWVPQAPPPLYSSQMDRVIGYSETKEANNMKGNSRSRLRDDNFTVPQISPQSNSKRTRYLW. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03962 292 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Seca8g03962 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca8g03962 292 SMART bboxneu5 53 100 IPR000315 GO:0008270
Seca8g03962 292 MobiDBLite consensus disorder prediction 116 173 - -
Seca8g03962 292 CDD Bbox1_BBX-like 5 47 - -
Seca8g03962 292 Gene3D Classic Zinc Finger 1 98 - -
Seca8g03962 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 285 - -
Seca8g03962 292 CDD Bbox1_BBX-like 57 100 - -
Seca8g03962 292 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Seca8g03962 292 MobiDBLite consensus disorder prediction 255 292 - -
Seca8g03962 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca8g03962 292 FunFam B-box zinc finger protein 21 1 98 - -
Seca8g03962 292 MobiDBLite consensus disorder prediction 270 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03962 Seca-Chr8 114064839 114066373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03962 1 292 C2C2-CO-like Transcription Factor Family AT1G75540 47.478 7.42e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g03962 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03962 - - lja:Lj5g3v0165540.1 416.772