Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03951 ATGGCTGGGTTTTTCTCTCTAAGTGGAGGTGGAGGAGGAGGAAGGGGAGGTCACCAACAAAAGGAAGAAGACGAAAGAGAAGATAACCACCACCACCACAACCACAGTAACAGCCAATTCTTGTTCAGAAACGAAGAGATCTACAACAAGGGATTCGAGATATGGCCACAGCAACAGTCGTATCACCCAAACATGAGCAACTACTACTCGTTCGGTGTGGGCCCTAGCCGAAGGAACAACAACAACACCACAAACTCCTCGAACGTGAACGACGACGTTTCAGTGTCGTTCTCTGATGAGTCGACGAGATTTGGGTTCACGGTGATGAGGTCTGGAGGTTTAGGTGGCGGCATGAACTGTCAGGACTGTGGAAACCAAGCTAAGAAAGACTGTACACATCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCTGCAGCCAAACGCCGTGAACGACAACAACAACTCTCTGCGTTGCAGCAGCAACAAAATCAGCAGGAACAGCAGCAACAATTCCGAGGAGGAGATCACTCAAAACGACATAGCAGAGAAAATCAAGGTGCTGCAGGCTCTCTTTCTTGCGCTCCAGTACCTATCACCACCACAGGTAAATTAGGGTTGGAACTGGGACAATTCCCGCCAGAGTTGAACTCTCCGGCGGTGTTCCGGTGTGTGAAAGTGAGCGCAATGGACGCACAAGATGAGCGTTACGCGTATCAAACGGCTGTCAACATAGGAGGACATGTTTTCAAGGGAATTCTCTATGATCAAGGCTCAGACAGTCCTTACACCAATGCAGCTGCTGGTGAGGGTTCCTCTGGTGGTGAAGCACAGCCACAAAATCTCATAACTGCCACAACCACCGCCACAACTGGTGGTAACAACCTATTTGACTCTTCTTCACTCTACCCGGCTCCACTAAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1005 0.4965 MAGFFSLSGGGGGGRGGHQQKEEDEREDNHHHHNHSNSQFLFRNEEIYNKGFEIWPQQQSYHPNMSNYYSFGVGPSRRNNNNTTNSSNVNDDVSVSFSDESTRFGFTVMRSGGLGGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQNQQEQQQQFRGGDHSKRHSRENQGAAGSLSCAPVPITTTGKLGLELGQFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGHVFKGILYDQGSDSPYTNAAAGEGSSGGEAQPQNLITATTTATTGGNNLFDSSSLYPAPLNAFMAGTQFFPPPRS. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03951 334 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 320 IPR007818 GO:0003700|GO:0006355
Seca8g03951 334 NCBIfam LRP1 C-terminal domain 223 270 IPR006511 -
Seca8g03951 334 MobiDBLite consensus disorder prediction 72 94 - -
Seca8g03951 334 MobiDBLite consensus disorder prediction 17 39 - -
Seca8g03951 334 MobiDBLite consensus disorder prediction 165 184 - -
Seca8g03951 334 MobiDBLite consensus disorder prediction 161 207 - -
Seca8g03951 334 Pfam Domain of unknown function (DUF702) 117 272 - -
Seca8g03951 334 Coils Coil 161 181 - -
Seca8g03951 334 NCBIfam putative zinc finger domain, LRP1 type 119 161 IPR006510 -
Seca8g03951 334 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03951 Seca-Chr8 113711373 113712790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03951 1 334 C2H2 Transcription Factor Family AT1G75520 45.730 1.42e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca8g03951 DUF702 2.1e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03951 - - gmx:100807290 406.371