Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03947 ATGATGAAATCAGGCATTGGAATTGAAGAGCGAAAGCAGCTGAAGAGGCCTGCACAAGCCAGCTCTAGAAAGGGATGTATGAGAGGCAAAGGAGGCCCTGAGAATGCTAGTTGCACCTACAAAGGTGTGAGACAGAGAACTTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGCACATTTGAAACCTCTCATGAAGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTATGGTTCAGATGCTAAGCTCAATCTGCCAGAGCTCTCTGTACCAGCCAATTCTCAATGTCCACCACCTTCTTCTGTTAACACTACTCAAATTCCCCAAATGCAACAACCTCAAATTCACAACAACTTCGATGTTGCCAATGTCAACTCTTCTAATCTCAATACCAACCTGAACCCTGTTGTCCCTATGGCTTCTCACCAAATTGGTAATGGACCAATTTACACCAGTGACCCTGTTATGTCCCTTCCATTGGACACCAATACTAAGCCAGTTGAAAGCTACTCAAAGCCTGTGGAGGATGAGAAGTTTCATTCATTTTGGGGGTCAATGAATGAAACCATGCCTGTGTTTGATGAGTCCATTTGGGCAGAAGCTGCTATGTCTCTGAATTTTCCCACAATTGCTGATGATGGAATTTATGCAGGTGGAAACTTGGCTGAGGTTGGTGCCTGGGACACCCTACAAACTCCATGGTGCATGTAA 741 0.4588 MMKSGIGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSVPANSQCPPPSSVNTTQIPQMQQPQIHNNFDVANVNSSNLNTNLNPVVPMASHQIGNGPIYTSDPVMSLPLDTNTKPVESYSKPVEDEKFHSFWGSMNETMPVFDESIWAEAAMSLNFPTIADDGIYAGGNLAEVGAWDTLQTPWCM. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03947 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 162 - -
Seca8g03947 246 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Seca8g03947 246 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Seca8g03947 246 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g03947 246 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Seca8g03947 246 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Seca8g03947 246 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Seca8g03947 246 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Seca8g03947 246 MobiDBLite consensus disorder prediction 1 34 - -
Seca8g03947 246 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Seca8g03947 246 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Seca8g03947 246 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03947 Seca-Chr8 113423980 113424720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03947 15 107 AP2-EREBP Transcription Factor Family AT1G75490 80.000 5.67e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g03947 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03947 - - gmx:100797850 347.436