Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03946 ATGGTGTCTCTAATTTCCCCACCTTCATTTTGCAGCATTCATATGCGCGAAACTCGCTTCTTCTCCACTCCTTTGCTTCCACCAAGTATTAGTCATTTGCAAAGGCGCATCGAATTCCAACATAGATGCAACTGTGAGAATTATAAATGGAAAACGATAGAGTGCAGAGTTATGAGCGCCAATGCATCTCCTCCGCCCTCAACAGCGTTGACGAAGGAACCACACAAATATTTCGATCACGTAACCATCACCGTTCGTGCAGGAGATGGAGGCCACGGAGCGATACTGAACCAGAGGGAAAAAGAGGAAGTTGAGAAGGGAAAGGGGAGGAAGAAGAAGGGCTCTTTCAAGAGGGATTTTGATGGGTCCCTTATACTCCCTATGGGTGGCCATGGAGGGGATGTGGTCATCTATGCCGATGAAACCAAAGACACGTTGCTAGAGTTTCACCACAAAAGCCGATATAATGCAAAACGTGGTGGCAATGTTGATGCAATGGGACTTTTGACCTCATACTTGCGCAATGGACTTGCTGCCCCGACTCTGCGCATTCCTGTTCCTCTAGGTACAGTTGTGAAAAGCAAACGAGGGAAGATGCTGGCTGATCTAGCACAGCCTGGTGATGAAGTTCTTGTTGCCAGGGGTGGACAAGGAGGGATTAGCTTGGTAGAAACTCCACAGCATAAAAGGAAAAAGATGATGGCTTTGACAACTAATGTGATGAGAGATGACTCTGATAAGGTTTTAATTCACGGTCAACCTGGGGAGGAAGTTAAGTTGGAGTTGATCCTGCGAGTTGTTGCTGACGTTGGCCTTGTTGGACTTCCAAATGCTGGGAAATCAACGCTTCTGGCAGCTATTACACTTGCAAAACCTGATATTGCTGATTATCCTTTTACAACATTAATGCCAAATCTTGGACGCCTTGGCGGTGATCCCAGCTTGGGGGCAGGGATGTATTCTTCTGAAGCTACATTGGCAGATTTGCCTGGTCTTATAGAAGGTGCTCACTTGGGAAAGGGTCTTGGCCGCAATTTTTTGAGGCACCTAAGGAGGACCCGACTATTAGTCCATGTTGTTGATGCAGCCACTGAGAACCCTATAAATGACTACAGAACTGTGAGAGAAGAGTTGCGCATGTATAATCCTGAGTACCTTGAACGACCATACGTTGTTATTTTGAATAAGATTGATCTACCAGGGGCAAAGGACAGGCTTCCAACACTGACTCAAGAAATTCTGAGAATTGGCAATGATGGTGCAGCTTCTGAACCAAAACCAAGCTCTGAAGTTCTGGCTCAATTGTCTTCCGATGAAAGTGACAGGAAGGAAAGAAAACTTGAGGACTATCCACGACCTTTCTCTGTTGTTGGAGTTAGTGTTCTAAAGGGTATCAATATTAAAGAAATGTTAAAGGAGATAAGGGCGGCTTTAAGGAAGTGCACAGATTCCAATGAAGCATTGGCTTTGAGTGTTCCACCATGA 1485 0.4552 MVSLISPPSFCSIHMRETRFFSTPLLPPSISHLQRRIEFQHRCNCENYKWKTIECRVMSANASPPPSTALTKEPHKYFDHVTITVRAGDGGHGAILNQREKEEVEKGKGRKKKGSFKRDFDGSLILPMGGHGGDVVIYADETKDTLLEFHHKSRYNAKRGGNVDAMGLLTSYLRNGLAAPTLRIPVPLGTVVKSKRGKMLADLAQPGDEVLVARGGQGGISLVETPQHKRKKMMALTTNVMRDDSDKVLIHGQPGEEVKLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATENPINDYRTVREELRMYNPEYLERPYVVILNKIDLPGAKDRLPTLTQEILRIGNDGAASEPKPSSEVLAQLSSDESDRKERKLEDYPRPFSVVGVSVLKGINIKEMLKEIRAALRKCTDSNEALALSVPP. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03946 494 ProSitePatterns GTP1/OBG family signature. 328 341 IPR006074 GO:0005525
Seca8g03946 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 479 IPR027417 -
Seca8g03946 494 CDD Obg 268 478 IPR031167 GO:0005525
Seca8g03946 494 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 72 476 IPR045086 GO:0003924|GO:0005525
Seca8g03946 494 Pfam GTP1/OBG 79 265 IPR006169 -
Seca8g03946 494 SUPERFAMILY Obg GTP-binding protein N-terminal domain 77 231 IPR036726 -
Seca8g03946 494 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 268 479 IPR031167 GO:0005525
Seca8g03946 494 ProSiteProfiles Obg domain profile. 75 267 IPR006169 -
Seca8g03946 494 Gene3D GTP1/OBG domain 76 266 IPR036726 -
Seca8g03946 494 MobiDBLite consensus disorder prediction 418 447 - -
Seca8g03946 494 Gene3D - 267 487 IPR027417 -
Seca8g03946 494 PRINTS GTP1/OBG GTP-binding protein family signature 343 361 IPR006073 GO:0005525
Seca8g03946 494 PRINTS GTP1/OBG GTP-binding protein family signature 291 309 IPR006073 GO:0005525
Seca8g03946 494 PRINTS GTP1/OBG GTP-binding protein family signature 270 290 IPR006073 GO:0005525
Seca8g03946 494 PRINTS GTP1/OBG GTP-binding protein family signature 326 341 IPR006073 GO:0005525
Seca8g03946 494 Pfam 50S ribosome-binding GTPase 269 396 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03946 Seca-Chr8 113417141 113422352 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03946 - - aprc:113846583 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03946 8 113417141 113422352 Seca8g03946 8 113417141 113422352 ECH