Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03943 ATGGTGTTTGTAGCTGCTGGAATGTCTCAAAAGGTGCTACCTGATGGCACAAAAGAGCTTCGTCGTGTCAAATTCAGACACCAGATGTTTGATGAGGAAGGTGCAAAACAATGGTGGGAGGAGAACGGGGAAAGGATTGTAGAAGCTTTGAACACCATCCCCTTGATCTTCATGGAAACAACACTTCACAGGATGCTGCCTGATGGAACAAAAGAGCTTCGACGTGTCGGATTCAGGGTGCTACCTGATGGCACAAAAGAGCTTCGTCGTGTCAAATTCAGACACCAGATGTTTGATGAGGAAGGTGCAAAACAATGGTGGGAGGAGAACGGGGAAAGGATTGTAGCCGCCAGATATTTGATGAGGAAGGTGCAAAGCAATGGTGGGAGTAGAACAGGGAAAGGATTGAAGAAGACTACCTCTGAAGTGTTGATTCCCTCAAGATCAAGTGGATGGATGCTGCCTGATGGAACAAAAGAGCTTCGACGTGTCGGATTCAGGGTGCTACCTGATGGCACAAAAGAGCTTCGTCGTGTCAGATTCAGGATGTTGCCTGATGGAACAAAAGAGCTTCGACGTGTCGGATTCAGACACCAGATTTTTGATGAGGAAGGTGCAAAACAATGGTGGGAGGAGAACGAGGAAAAGATTGAAGATATACCAGTAGCTTCAAACACCATCCACTTGTTCTTCAGTGAAACAACACTTCATAGGGTGCTGCCTGATGGGACAAAAGAGCTTCGTCGTGTCAGATTCAGCCGCCAAATGTTTGATGAGGAAGCTGCAAAGCAATGGTGGAAGGAGAACAGGGAAAGGATTGAAGAAGACTACCTGTGA 837 0.4683 MVFVAAGMSQKVLPDGTKELRRVKFRHQMFDEEGAKQWWEENGERIVEALNTIPLIFMETTLHRMLPDGTKELRRVGFRVLPDGTKELRRVKFRHQMFDEEGAKQWWEENGERIVAARYLMRKVQSNGGSRTGKGLKKTTSEVLIPSRSSGWMLPDGTKELRRVGFRVLPDGTKELRRVRFRMLPDGTKELRRVGFRHQIFDEEGAKQWWEENEEKIEDIPVASNTIHLFFSETTLHRVLPDGTKELRRVRFSRQMFDEEAAKQWWKENRERIEEDYL. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03943 278 ProSiteProfiles BRX domain profile. 207 278 IPR013591 -
Seca8g03943 278 Pfam Transcription factor regulating root and shoot growth via Pin3 78 116 IPR013591 -
Seca8g03943 278 Pfam Transcription factor regulating root and shoot growth via Pin3 238 277 IPR013591 -
Seca8g03943 278 Pfam Transcription factor regulating root and shoot growth via Pin3 183 217 IPR013591 -
Seca8g03943 278 Pfam Transcription factor regulating root and shoot growth via Pin3 11 48 IPR013591 -
Seca8g03943 278 ProSiteProfiles BRX domain profile. 64 119 IPR013591 -
Seca8g03943 278 ProSiteProfiles BRX domain profile. 1 51 IPR013591 -
Seca8g03943 278 PANTHER PROTEIN BREVIS RADIX-LIKE 1 238 278 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03943 Seca-Chr8 113309353 113320803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03943 76 278 Major Intrinsic Protein MIP AT1G31880 30.093 3.32e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03943 - - sind:105159606 91.2781