Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03886 ATGGACGACGTTTACGAATCTCAGGAAGACGAAGACGACGGCGACGTTTTGCCTGACGACGAAGAAAATGAATCTTCTCCTTCCGCCTCCTCTGTTCTCACCGTCCTTGTCGCAGAGAAGCTCGGAGAGGCGGGCTTGAAGCTGCCTAACGTGGACTGCTCCTACAATCTGAGCCCTGAGGAGCTCTGCACCAAGATCTCGCTCTGCGATGCTCTCATCGTGCGCAGCGGCACCAAGGTCACATGCGAGGTCTTCAAGTCCTCTGCTGAGAGGCTCAAGGTCGTCGGAAGAGCCGATGTCAGAATCGATAACGTGGAACTGGCCGCCGCTACTGAGCATGGTTGCTTAGTCGTCAATGCGCCAACCGCTAACACCGTTGTCGTCGCCGAGCACGAGATTGCGCTCTTGGCCGCCATGGCTAGGAACGTTGCTCAAGCTTATGCGTCAGTAAAAGCTGGGAAGTGGCAGAGAAACAAGTATGTTGGAGTTTCCCTGGTTGGGAAGACACTTGCTGTCCTGGGATTTGGAAAGTTTGACTCTGAAGTTGCTCGTCGTGCCAAGGGACTTGGTATGAACGTTATTGCACATGATTCATATGCTCTTGCAGATCGCGCTCGTGCTATTGGTGTGGAGCTTGTGAGCTTTGATGAGGCCATTGCCAATGTGGATTTCATCTCTCTGTTTGATAAGGAAATTGAAGATGCACTTCACCTGTTTGATAAATTGCCCGTGAGAAATGACATTTGTTGGAATACATTAATTGTTTTAGGTGCTGTTTTTGCTAGAATTGCCATGGGAACAACTTGTGATTTGGTTGGACCTCGCCTTGCTTCTGCTTCTCTTATTCTCCTCACTGCACCAGCTGAATACTTCTATGATAGATTTAATCTGAAACCCCACACTGTTGGAATCATTGCTGCAAGCTTTGGCTTAGCTAAAGATATTGGTTTTCAAGTTGATATTGGTTGA 969 0.4881 MDDVYESQEDEDDGDVLPDDEENESSPSASSVLTVLVAEKLGEAGLKLPNVDCSYNLSPEELCTKISLCDALIVRSGTKVTCEVFKSSAERLKVVGRADVRIDNVELAAATEHGCLVVNAPTANTVVVAEHEIALLAAMARNVAQAYASVKAGKWQRNKYVGVSLVGKTLAVLGFGKFDSEVARRAKGLGMNVIAHDSYALADRARAIGVELVSFDEAIANVDFISLFDKEIEDALHLFDKLPVRNDICWNTLIVLGAVFARIAMGTTCDLVGPRLASASLILLTAPAEYFYDRFNLKPHTVGIIAASFGLAKDIGFQVDIG. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03886 322 Gene3D - 124 240 - -
Seca8g03886 322 PANTHER FORMATE DEHYDROGENASE 1 33 227 - -
Seca8g03886 322 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g03886 322 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 133 240 IPR006140 GO:0051287
Seca8g03886 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 240 IPR036291 -
Seca8g03886 322 MobiDBLite consensus disorder prediction 1 30 - -
Seca8g03886 322 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 50 132 IPR006139 GO:0016616|GO:0051287
Seca8g03886 322 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 48 161 - -
Seca8g03886 322 Gene3D - 49 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03886 Seca-Chr8 112009811 112010779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03886 255 291 Inorganic Solute Cotransporters AT1G12940 78.378 2.08e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03886 K00058 - gmx:100819264 315.849