Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03854 ATGGCCTCAAGCTCAGCTTGGACTACAAAGCAGAACAAAAGATTTGAGAATGCTTTGGCCATCTACGACAAGGACACCCCAGATCGGTGGCAGAAACTGGCCAGAGCCGTTGGAGGGAAGACAGTGGAGGAAGTAAAAAGGCATTATGAGATGCTTGTTGAAGATTTGAAGCAGATTGAGGAAGGTCATGTACCCTTGCCCAATTACAGAAGTGCTGCAACAATAGGAGGCAGCACCAAAGGTTACACTTACACATATACAGATGAAGAACAAAGGATGAAGGTTCTAAGCCTCCAGTGA 300 0.46 MASSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPNYRSAATIGGSTKGYTYTYTDEEQRMKVLSLQ. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03854 99 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Seca8g03854 99 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Seca8g03854 99 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca8g03854 99 SMART sant 3 55 IPR001005 -
Seca8g03854 99 FunFam Transcription factor SRM1 1 66 - -
Seca8g03854 99 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
Seca8g03854 99 Gene3D - 1 66 - -
Seca8g03854 99 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 73 IPR044636 GO:0003700
Seca8g03854 99 CDD SANT 6 53 IPR001005 -
Seca8g03854 99 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03854 Seca-Chr8 109938380 109939577 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g03854 Myb_DNA-binding 6.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03854 - - gmx:100804049 164.851