Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03851 ATGGAAATGAAGCGAGGGTTAGCAGTGATTACAGTTACGGTGTTGTTTTTGTTGGTTGAGTTAACAATGGGTTTAAGTTCCAGAACCGAATGGTTAGCGTTAAAGGAACTTCGTTCATCAATGGGGATAAGGGCAAAGGATTGGCCCATAAAAACCGAACCTTGCCGGAACTGGACCGGAGTTCAGTGCCGGAACGGTCGAGTTGTGGGTATCAATGTTTCTGGGTTGAAGCGAACCCGAGTGGGTCGTCTTAACCCAAGCTTCGAAGTGGATTCTCTTGCCAATTTTACCCTCTTGGACTCGTTCAACGCTTCTGGGTTCATGCTTAATGGGTCTATTCCTGATTGGTTTGGTGAGAATCTTGGTGCGCTTCAAGTGCTTGACCTAAGGTCTTGTTCTATAACGGGTATGATTCCTGGTTCACTTGGGGGTTTGAGTAGTTTGAAGTTTTTGCTCCTTTCAAGGAATAGTCTTACTGGTAGAATGCCTTCAACGTTGGGAATGTTATCTGGGCTTTCTGTTCTTGATCTCTCTGAGAACATGCTTTCAGGACCAGTGCCTAGCTCTTTATCTAAGCTTGGGAACCTTACAAGGCTTGATCTTTCTTCTAATTACTTATATGGGTCTATTCCACCTGAACTGGGTGCCCTTTCAAATCTCCAAAAATTGAACCTTTCTGGGAATTCTTTCACTGCCTTGGTTCCATCTCAACTGGGTAACCTTTCCAAGTTGGTTGAGCTTGATCTTAGCATAAATTTTCTGTCTGGGTCGTTGCAGGGTAGTTTGTTTGTTTCTTCTCTTGTTGCCCTTCAAGTTCTTATTCTCAGTGGGAATTCATTTGGTGGTGTTCTTCCTGCTATGTTGTGGTCATTGCCTAGCTTGCGTTTTGTTGATGTGTCCAGCAACAACCTCACTGGTCCACTGCCTAAATTGTCTAGTTCAAATGTCAACTCTACTGGTGCCATGTTCAATCTCTCAAACAATTTGTTCTATGGACATGTAAATATTTCATTGAACAAGTTTGAAATGATTGATTTGTCTGGTAATTATTTGGAAGGTGAGGTGCAAGTTGGTGGTCTTAATAATGTTACTCTAGCTAGAAATTGCCTGCAGAAGATTTCAAACCAGAGGGGTTTGGAAGAGTGTAGACAGTTTTATCTTCAGAGAAATTTACCCTTTGATGCTGGTGCACAAGAACAAGCACAACCTCCATTACAAGAATCTGAGTCTAAAAGCAACAAGCGAGTTGTATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGTGCTACTGGTGTTGGTACTCATAGTGGTTCGAAAGCAATGTTATAATAGTAAAAGCTTGGGAGTTCAAAGGGGGACCGAAAATGGGGGGCCTGTTCCAGAGGGGGAAAGTCCTACACCACCTAAGGATCCTATCTTTGTAACTGCCGTGGGAGAATCATTTACTTTTGAGCAAATACTCCAATTGACTGGCAACTTTGCTGAAGAAAATATCTTAAAGCAGGGTCATTCTGGAGTCTTATTCTGGGGGGTCCTGGAAAGTGGAGCAACTGTGGTTGTAAAAAAGGTAGATTTAAATTTATTTAAGAGAGAATCATATGTTGTGGAATTGGAATTATTAAGCAAGGTTTCACATGAAAGACTGGTCCCAATCCTGGGGCACTGCTTGGAGAATGAGAGGGAGAAATGCATAGTTTACAAGTATATGCCAAATGGAGATTTGGCTACTTCCTTGCACAGAGTTTCTGGTTCAGATGGTAAATTACAGTCCCTGGATTGGATCACAAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTGGCTTACCTACACGAGTGCAGCCCTCCCCTTGTTCACAGAGATGTCCGAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTACTGCCCAAGGAGATCTTCATCAGAATGTCATCTCAAGGGTTTTCAGCAAGCCACCATCTTCTAATCAAGGAAATTCTGGTAGATCATCTGTGACATGTGCCTATGATGTCTATTGTTTTGGGAAGATTTTACTTCAGCTTGTTACTGGTAATCTTGATGTCAGCAACTCTGAAGATGACACAACAAAAGAATGGTTAGAGCAAACCCTGCGTTACATCAGCATATTCGACAAAGAACGGTTGACTAAGATTGTTGACCCATCTTTGATTGTGGATGATGACTTATTAGAAGAGGTATGGGCTATGGCAATTGTGGCAAAGTCATGCTTGAATCCCAAGCCATCCAAACGTCCTCCTATGAGACATGTCCTCAAAGCATTGGAAAATCCATTGAAGATTGTCAGAGAAGAAAATTTCAGCTCAGCAAAGTTGAGAACAACTTCATCTAATAGATCTTGGAACACTGCATTCTTTGGTAGCTGGAGACACAGTTCATCAGAGAGTGCTGTTGCCACAGCACATACAAACAGAGAGGGTCCTAGTGGCATTAAACAAGCAGGAAGAGTAGGTTCTCAAGGTAGTGGTGGCAATGATCACTCATCTTCCAATAAAAGATCATCCAATGAAATTTTCCCTGAACCATTAGAAACACAAGATGTGGAGACTGGAGAGGCAAGATGA 2619 0.4223 MEMKRGLAVITVTVLFLLVELTMGLSSRTEWLALKELRSSMGIRAKDWPIKTEPCRNWTGVQCRNGRVVGINVSGLKRTRVGRLNPSFEVDSLANFTLLDSFNASGFMLNGSIPDWFGENLGALQVLDLRSCSITGMIPGSLGGLSSLKFLLLSRNSLTGRMPSTLGMLSGLSVLDLSENMLSGPVPSSLSKLGNLTRLDLSSNYLYGSIPPELGALSNLQKLNLSGNSFTALVPSQLGNLSKLVELDLSINFLSGSLQGSLFVSSLVALQVLILSGNSFGGVLPAMLWSLPSLRFVDVSSNNLTGPLPKLSSSNVNSTGAMFNLSNNLFYGHVNISLNKFEMIDLSGNYLEGEVQVGGLNNVTLARNCLQKISNQRGLEECRQFYLQRNLPFDAGAQEQAQPPLQESESKSNKRVVFILVGIFGGLGFIVLLVLVLIVVRKQCYNSKSLGVQRGTENGGPVPEGESPTPPKDPIFVTAVGESFTFEQILQLTGNFAEENILKQGHSGVLFWGVLESGATVVVKKVDLNLFKRESYVVELELLSKVSHERLVPILGHCLENEREKCIVYKYMPNGDLATSLHRVSGSDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVRASSILLDDKFEVRLGSLSEVTAQGDLHQNVISRVFSKPPSSNQGNSGRSSVTCAYDVYCFGKILLQLVTGNLDVSNSEDDTTKEWLEQTLRYISIFDKERLTKIVDPSLIVDDDLLEEVWAMAIVAKSCLNPKPSKRPPMRHVLKALENPLKIVREENFSSAKLRTTSSNRSWNTAFFGSWRHSSSESAVATAHTNREGPSGIKQAGRVGSQGSGGNDHSSSNKRSSNEIFPEPLETQDVETGEAR. 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03851 872 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Seca8g03851 872 FunFam Predicted protein 467 571 - -
Seca8g03851 872 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 793 - -
Seca8g03851 872 MobiDBLite consensus disorder prediction 833 859 - -
Seca8g03851 872 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 90 186 - -
Seca8g03851 872 Pfam Protein tyrosine and serine/threonine kinase 500 771 IPR001245 GO:0004672|GO:0006468
Seca8g03851 872 Gene3D Transferase(Phosphotransferase) domain 1 572 796 - -
Seca8g03851 872 Pfam Leucine Rich Repeat 219 241 IPR001611 GO:0005515
Seca8g03851 872 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515
Seca8g03851 872 SMART LRR_typ_2 267 290 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 145 168 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 121 144 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 193 216 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 169 192 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 217 240 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 291 314 IPR003591 -
Seca8g03851 872 SMART LRR_typ_2 241 265 IPR003591 -
Seca8g03851 872 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 286 - -
Seca8g03851 872 Pfam Leucine rich repeat 153 206 IPR001611 GO:0005515
Seca8g03851 872 SUPERFAMILY Protein kinase-like (PK-like) 473 773 IPR011009 -
Seca8g03851 872 MobiDBLite consensus disorder prediction 815 872 - -
Seca8g03851 872 Gene3D Ribonuclease Inhibitor 189 394 IPR032675 -
Seca8g03851 872 Gene3D Phosphorylase Kinase; domain 1 472 571 - -
Seca8g03851 872 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 189 781 IPR046959 -
Seca8g03851 872 SUPERFAMILY L domain-like 51 311 - -
Seca8g03851 872 ProSiteProfiles Protein kinase domain profile. 496 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03851 Seca-Chr8 109883445 109888649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03851 29 664 Miscellaneous Gene Families AT2G16250 50.449 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Seca8g03851 PK_Tyr_Ser-Thr 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03851 - - gmx:100815313 1219.91