Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g03802 | ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGCCACCCCCAAGCCCTTCCTGCTCCAACAACAACAATAACAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGAGTTGGCACAAGACCCTATAATTACCTTATGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCACTCACAGTCACAAGAATGCCCAGTGTGCAAGGCACTGATTGAGGAGGAGAAGTTGGTTCCATTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCAAAATCCATTCCTGGTGTTAATATCCCACATCGTCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTACTCAACACGGGTTTGGATTCACAGGTGGATTGGGAGGGTTTGCACCAGCAGCAACTGCTAGATTTGGTAATTTCACATTGTCCGCAGCATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGATTTCATGGTGCGACCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCTGCACACAGGTCAAGGACAACAAGATTATTATCTGAAGAGGCTGCTGCTGTTTATTATTTTTTGTGTTGTCCTTGCTTTTATTTGGCAGTAG | 690 | 0.4406 | MASGFGESTSRPPPSPSCSNNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSQECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFTQHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAAGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLLFIIFCVVLAFIWQ. | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g03802 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 86 | IPR013083 | - | |
Seca8g03802 | 229 | ProSiteProfiles | Zinc finger RING-type profile. | 32 | 73 | IPR001841 | - | |
Seca8g03802 | 229 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 18 | 225 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Seca8g03802 | 229 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Seca8g03802 | 229 | CDD | RING-HC_AtRMA-like | 30 | 74 | - | - | |
Seca8g03802 | 229 | SMART | ring_2 | 32 | 72 | IPR001841 | - | |
Seca8g03802 | 229 | ProSitePatterns | Zinc finger RING-type signature. | 47 | 56 | IPR017907 | - | |
Seca8g03802 | 229 | MobiDBLite | consensus disorder prediction | 86 | 123 | - | - | |
Seca8g03802 | 229 | SUPERFAMILY | RING/U-box | 29 | 85 | - | - | |
Seca8g03802 | 229 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 16 | 86 | - | - | |
Seca8g03802 | 229 | Pfam | Zinc finger, C3HC4 type (RING finger) | 32 | 72 | IPR018957 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g03802 | Seca-Chr8 | 108837134 | 108839594 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g03802 | 16 | 212 | C3H Transcription Factor Family | AT1G19310 | 66.986 | 3.37e-89 | 261 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g03802 | K10666 | - | gmx:100527488 | 392.889 |