Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03802 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGCCACCCCCAAGCCCTTCCTGCTCCAACAACAACAATAACAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGAGTTGGCACAAGACCCTATAATTACCTTATGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCACTCACAGTCACAAGAATGCCCAGTGTGCAAGGCACTGATTGAGGAGGAGAAGTTGGTTCCATTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCAAAATCCATTCCTGGTGTTAATATCCCACATCGTCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTACTCAACACGGGTTTGGATTCACAGGTGGATTGGGAGGGTTTGCACCAGCAGCAACTGCTAGATTTGGTAATTTCACATTGTCCGCAGCATTTGGTGGTTTTATACCATCCTTATTTAACTTTCAGTTGCATGGATTTCATGGTGCGACCATGTATGGTGGAGCAGCTGGTTTTCCTTATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCTGCACACAGGTCAAGGACAACAAGATTATTATCTGAAGAGGCTGCTGCTGTTTATTATTTTTTGTGTTGTCCTTGCTTTTATTTGGCAGTAG 690 0.4406 MASGFGESTSRPPPSPSCSNNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSQECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFTQHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAAGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLLFIIFCVVLAFIWQ. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03802 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Seca8g03802 229 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Seca8g03802 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca8g03802 229 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g03802 229 CDD RING-HC_AtRMA-like 30 74 - -
Seca8g03802 229 SMART ring_2 32 72 IPR001841 -
Seca8g03802 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Seca8g03802 229 MobiDBLite consensus disorder prediction 86 123 - -
Seca8g03802 229 SUPERFAMILY RING/U-box 29 85 - -
Seca8g03802 229 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Seca8g03802 229 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03802 Seca-Chr8 108837134 108839594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03802 16 212 C3H Transcription Factor Family AT1G19310 66.986 3.37e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03802 K10666 - gmx:100527488 392.889