Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03799 ATGAATCATGTTGTGTTTCACTTTCACCTCATTTTCTTCACACTAAGCTTCCTCCTTTCTTTAAATGCCAGGGCACAGCAGAATTACTCAGGAAATTCAATACTCAGCTGCAAAAATGACAATAAAATGGGGCCTTCTGCAGCATTCCTTTACACCGGCAATGGCCTAAACAAATCCTGCATGGCCTTCCTCATCTTCAAATCCCAACCTCCTTACAATACCATCCACACAATTTCCAACCTCACATCATCAAACCTTGAAGAACTTGCCAGAATCAATGGTGCCACTTCGCTCACAGTGTTCCCAACTGGCAAAGAGGTTATTGTCCCTGTGAATTGTTCTTGTTTAACCAGGGATTATTACCAAGCAGATACCAAATACATACTGGGACCAAACCCAACATACTTCACAGTTGCCAATGATACTTTTCAGGGTTTAGCCACTTGTGATTCTCTCAAGCAAGCCAATCCATATGGGGAACTTGATTTGCATCCTGGCATGGAATTGCACTTGCCACTCAGATGTGCTTGTCCAACATGGAATCAAACCACAAAGGGCACCAAGTATTTACTGACATACTCAGTGAACTGGGGTGATAACATTCAGAATATTGCTACAAGATTCAATGTAGCAGCAGGTAATCTACTTGATGCTAATGGTTTGTCCACACAAACAGAAACTCTTTTTCCATTCACAACTATTCTGATTCCTTTGCCAAGTGAACCAGTGAGTTCAACTACCATAGTTGCTAATGACCCACCAGCTATGTCACCTACTCCTGTTTGCAGCTATAAAAAGTGCAGGTCAAAGAGAAAACTCCACATTGCTGTTGTTACTACAGGGGTTTCCATGCTGGTTCTGTGTGTCATTTTATCTGCGGTGTTTCTGATTCTGCTCAGAAAGAGATCAGCAAGGTTCTTTAAGCGAGGAACAGAAGGTAAGAAAATAAAGGGGGTGTCTTCAGAAGATATCCGTGAGGAGATAGCAATCATTGAACATCTCTCCAAAGTGTACAGATTTGAGGAAATAAAGGAAGCGACTGAAAATTTTAGTTCAAAGAATAGAATTAAAGGTTCTGTATTTCGTGGGGTATTTGGAAATGGCAAGGACATTTTGGCTGTCAAAAGAATGAGAGGAGATGCGTCCAAGGAAATCAATTTGCTGAAAAAGATCAATCATTTCAACCTGATAAAGCTGCAAGGTTACTGTGAATACTATGGCTGCCACTATCTAGTTTATGAATACATGGAAAATGGCTCTTTAAGAGAATGGCTTAGCAAAAACAGGTCCATGGAGCACCAGAGTTGGGCAAAGAGGATTCAGATTGCTCTGGATATTGCCAATGGACTTGAGTATCTTCACAACTTCACAGAACCTTGTTATGTGCACAAGGGCATAAACAGTGGAAATATTCTACTAAACAAAGATCTCAGGGCCAAGCTAGCTAATTTTGCTCTTGCTGAAGAATCAGAAAGGATAATAACTTCTGGTTGCCCCACATCACATGTTGTGGGATCCAGGGTTTATATGGCTCCAGAGTATCTGGAGGCAGGAATAGTCACAACCAAAATGGATGTCTATGCCTTTGGATTGGTGCTTTTGGAATTGATCACGGGCAAAGAATATTTTACCCTGCAAGATGGAAGAGAAGTAATGCTTCATGCAATCATAGCAAATCTCATTGGTAAAGAGAATGAAGAAGAGAAGGTGAGTTTGTTCATTGATCCTAGCCTCATGGGAAACTGTGGGAAAGTATGTGCACTCCAGCTAGTTAAACTAAGTCTAGCCTGCTTGAACCAAGAACCAGAAAGGAGACCAAACATGGCAGAGGCAGTCTCTAGCTTATTGAAAATACAGACAAATGATATGCACCAACGAATACCACCCAGCATCAATAAAAGTTTAGGCCTGGAGAGGTGA 1920 0.413 MNHVVFHFHLIFFTLSFLLSLNARAQQNYSGNSILSCKNDNKMGPSAAFLYTGNGLNKSCMAFLIFKSQPPYNTIHTISNLTSSNLEELARINGATSLTVFPTGKEVIVPVNCSCLTRDYYQADTKYILGPNPTYFTVANDTFQGLATCDSLKQANPYGELDLHPGMELHLPLRCACPTWNQTTKGTKYLLTYSVNWGDNIQNIATRFNVAAGNLLDANGLSTQTETLFPFTTILIPLPSEPVSSTTIVANDPPAMSPTPVCSYKKCRSKRKLHIAVVTTGVSMLVLCVILSAVFLILLRKRSARFFKRGTEGKKIKGVSSEDIREEIAIIEHLSKVYRFEEIKEATENFSSKNRIKGSVFRGVFGNGKDILAVKRMRGDASKEINLLKKINHFNLIKLQGYCEYYGCHYLVYEYMENGSLREWLSKNRSMEHQSWAKRIQIALDIANGLEYLHNFTEPCYVHKGINSGNILLNKDLRAKLANFALAEESERIITSGCPTSHVVGSRVYMAPEYLEAGIVTTKMDVYAFGLVLLELITGKEYFTLQDGREVMLHAIIANLIGKENEEEKVSLFIDPSLMGNCGKVCALQLVKLSLACLNQEPERRPNMAEAVSSLLKIQTNDMHQRIPPSINKSLGLER. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03799 639 Gene3D Transferase(Phosphotransferase) domain 1 416 632 - -
Seca8g03799 639 Pfam Protein kinase domain 358 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03799 639 FunFam PTI1-like tyrosine-protein kinase 3 416 627 - -
Seca8g03799 639 SUPERFAMILY LysM domain 191 237 IPR036779 -
Seca8g03799 639 Gene3D Phosphorylase Kinase; domain 1 312 415 - -
Seca8g03799 639 Gene3D LysM domain 179 247 IPR036779 -
Seca8g03799 639 SUPERFAMILY Protein kinase-like (PK-like) 333 616 IPR011009 -
Seca8g03799 639 CDD LysM 192 236 IPR018392 -
Seca8g03799 639 ProSiteProfiles LysM domain profile. 191 236 IPR018392 -
Seca8g03799 639 Pfam LysM domain 193 237 IPR018392 -
Seca8g03799 639 ProSiteProfiles Protein kinase domain profile. 301 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03799 639 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03799 Seca-Chr8 108736575 108738494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03799 4 618 Receptor kinase-like Gene Family AT2G23770 39.117 1.07e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca8g03799 Pkinase 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03799 - - gmx:100806221 949.503