Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03780 ATGTTAAGAGACGAAAGCGTGGGTTCAATAAGCGCGAGGCACAGCGCCACCACCGTTTCTACAGTGTCGAATAAGGTTCTGGTGGCGGTTAAGGCGGAGAAGGTGATCTCCAACACCGCATTAGCTTGGGCACTCACTCATGTTGTTCACTCCAGCGACTCCATCACTCTGCTCGCCGTTTATTCTGCCGAGAAAACTGTAAATTTGGATGAGGAAAGTACTAAGCGGATGTGGATTGTTTCAGGCAGAAGATTCTGGAACTTTTCGAGATTTGCTGGAGACTGTACGAACGGAAGCGCGGGAAAGTTGCCGGAGCGGATTTCTGATATCTCTGAGTCTTGTGCTCAGATGGTGCTGCAGTTGCACAATCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTCACGGGTAGTCCCAGTGGCGCTGTGGCGGCTGAAGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTGAAACATTGCATGGATGAACTAAACTGTAACATTGTGGTGATGAATGGCTCTCAGCCAAAAGTCCTCAGGCTTAACTTAGGATCCTCCGATGAACTCCAAACTCCTTTTTTCTCTGCTGCTTCTTCACCAGGCATAGAAATTGGAATGCTAAAAGGGCGCAGATTGAAGCATTCCACCCCAGTAAGTAGCCCTGAAGAAGCAGAAGCAGGTACTTCTGTTACAAGAAACACAGGAGCAAATTCAGTGTCAAGTTCTGACTCAACGACTTCTCCTTTCCTAGTCTATGAACAAAACCCCCTATACGAGGGTCAGGGACCACAGAAAAGAACAAACAAACCAATCAACGAGCCAAAAGATTTCAACCTCCATCCACCATTGTACTCTGATTCGGAAAAGGATCGTCTACCCCTTTTGTGGACACGCCCAACATCGTCTGTGGCTAGTGATAACAAGACTGTATTTTGGATTCATCAAAACCACATTATACATGAAAAACCTCAGAAAGCTGAAAGCAGAATTATCCAAAGAACTAAATCTCCAACTTCTAAAACATTACTTGAGAATTTTATACATGGTGATCAAGAGATGAGAGCAGATGAACTTGGGTTTAACCAAGCTCAAAGTAGAAGTTATGTTAAAAACTCGGGCACAAAAAGTGATTCCATTCCTTTGGGCAGAACTTCCTCTATACCTCCTCCCTTATGCTCACAGTGTCAGAATAAAGCACCAGTATTCGGAAAGCCTCCTAGACGGTTTTCTTACAAAGAGCTAGAGGAAGCTACAGACATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTTGGTGTAGTTCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCAGTGAAACAGTTAAAGTTTAGTGGCTCTCAAGCAGATATTGATTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCTCAACACAGAAATGTTGTATTGTTGATAGGATATTGTATAGAAGGCAATTTGAGGATTTTAGTCTATGAGTACATATGTAACGGATCCTTGGACCTCTGCTTACATGGAGACGAGAGCATACCGTTGGATTGGAACTCCCGCTTAAGGATAGCAATTGGAGTTGCACGAGGCTTACGCTACCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGGCCCAAAAATATCCTCTTAACCCATGATTTTGAACCTCTGGTGGCTGATTTTGGACTTGCTAGATGGCACTCAGAATGGAATATAAATACTGAAGATCGCGTTATAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGAGGCTGGAAATCTAACATACAAAGTAGATGTATATGCATTTGGAATTGTTTTATTGGAGTTAATAACCGGTCGAAGAATTAGGGAGTTGGAACAGTTTAATGGACACTCCTATATTTCTGAATGGTTTCACCCCATTCGCATGTTAGAGCCCAATCATATCATACAAAACGTTCGATCTCTTAACCCGTGCTTGGATTCTGAGGCGTCACTGGAATTTAATCTTCAATTGCAAGCCATGGCACGAGCTGCTTCATTGTGTCTACGTCTGGATCCTGATGCCAGACCCCCAATGTCAAAGATCCTCAGAGTGCTGGAAGGGGGCGATCCAGCAGGTCCTATGGGTTTAGACATCAATTCAGTTGGCAACAGAAGTGGCCATTTAAGTGGTTTGACTTCGCACACTCCACCTAAAGGTACAGTAAGCCATTCTCGTAGGCTATCACATTGA 2253 0.4416 MLRDESVGSISARHSATTVSTVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAEKTVNLDEESTKRMWIVSGRRFWNFSRFAGDCTNGSAGKLPERISDISESCAQMVLQLHNQIEVRVKIKVVTGSPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCNIVVMNGSQPKVLRLNLGSSDELQTPFFSAASSPGIEIGMLKGRRLKHSTPVSSPEEAEAGTSVTRNTGANSVSSSDSTTSPFLVYEQNPLYEGQGPQKRTNKPINEPKDFNLHPPLYSDSEKDRLPLLWTRPTSSVASDNKTVFWIHQNHIIHEKPQKAESRIIQRTKSPTSKTLLENFIHGDQEMRADELGFNQAQSRSYVKNSGTKSDSIPLGRTSSIPPPLCSQCQNKAPVFGKPPRRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKFSGSQADIDFCREVRVLSCAQHRNVVLLIGYCIEGNLRILVYEYICNGSLDLCLHGDESIPLDWNSRLRIAIGVARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWHSEWNINTEDRVIGTSGYLAPEYLEAGNLTYKVDVYAFGIVLLELITGRRIRELEQFNGHSYISEWFHPIRMLEPNHIIQNVRSLNPCLDSEASLEFNLQLQAMARAASLCLRLDPDARPPMSKILRVLEGGDPAGPMGLDINSVGNRSGHLSGLTSHTPPKGTVSHSRRLSH. 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03780 750 FunFam Os07g0541700 protein 504 592 - -
Seca8g03780 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 549 561 IPR008266 GO:0004672|GO:0006468
Seca8g03780 750 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 400 503 - -
Seca8g03780 750 PANTHER OS01G0750732 PROTEIN 176 708 - -
Seca8g03780 750 MobiDBLite consensus disorder prediction 219 286 - -
Seca8g03780 750 SUPERFAMILY Protein kinase-like (PK-like) 408 706 IPR011009 -
Seca8g03780 750 Pfam Protein tyrosine and serine/threonine kinase 434 662 IPR001245 GO:0004672|GO:0006468
Seca8g03780 750 MobiDBLite consensus disorder prediction 719 750 - -
Seca8g03780 750 ProSiteProfiles Protein kinase domain profile. 428 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03780 750 Gene3D Transferase(Phosphotransferase) domain 1 504 711 - -
Seca8g03780 750 MobiDBLite consensus disorder prediction 723 750 - -
Seca8g03780 750 MobiDBLite consensus disorder prediction 228 259 - -
Seca8g03780 750 Gene3D Phosphorylase Kinase; domain 1 396 503 - -
Seca8g03780 750 SMART tyrkin_6 428 706 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03780 Seca-Chr8 108290472 108296165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03780 416 707 Trihelix Transcription Factor Family AT5G38560 44.746 5.72e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca8g03780 PK_Tyr_Ser-Thr 5.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03780 - - gmx:100813141 1251.88