Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03774 ATGGGAGCACAACAAAACTGTGATGGCTGCAGATCATGGGTGGAAGACATTTACTGGACCCATTTCCAATTCCTCCATTTCGCACAATTTCTCCGTACCGATTATGAGCAACACCTTGCACTTCCCAAAACATTTTCTGATAATTTAAAGAAGAAGTTGCCAGAAAATGTGTCCCTTAAAGGTCCCGGTGGTGTTGTGTGGAACATAGGGCTGACAACTAGAGATGATACCTTGTACTTCACGCATGGTTGGGAACAATTTGTGAAAGATCACTCTCTAAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGAATCACTGTTTGATGTTTTAATATTTGATGGGGAGAGCTTCTGTGAGAAAGCAGCATCTTATTTTGTTAGAAAATGTGGGCATGCTGAACATGGGGGTGGATGTTCTAGCAAGAGAAGAGACACAGATAACTCTGTTGATGAAGTTAATACTCCTTCTAATGGTGGTGTTGAATGTGTTTCACCTGACAAGTCTGCCCATCTTAATAGTGTTCAAGTGCCATTTGCTGTACCTTGTGAAACTCCTAATGAAAAGACTTATAATGGTGGTGTTGAATCTGCATGTGCTGAGCAATTTATGGGTGATGCAGTTCCTGAGCAGTTTGTGACTGAACCAGTCACTGATACTGAAGCAGTAGCTGTGCCTGTTCCTTCCCAAACTATCGGCAAAAGGATCAGTAGGTCCGTTTATGCTGTTAAGCCTGTCCAGCATAAGCGGAGAGGAAGACCACCAAAAGCATCTAATTCTCGTGAGAGAGCACTTAACTGGGTCACTGAATCTGAGACTGCTTCAGGGGGTAAATCTGGGAGTGGATCACCTGAATTATATATCTCAAATAGAAGGCCTGTCACAGAAAATGAGATTAAAAATACCCTCCAGATGGCTCAGGCAGCATGTACCAACGACAGTGTGCACGTGACTATGCGACCTTCGCATGTATACAAGAGATTCTTCGTGGTAAACAATTGCCTTTCCAATCTTAATTGA 1023 0.4242 MGAQQNCDGCRSWVEDIYWTHFQFLHFAQFLRTDYEQHLALPKTFSDNLKKKLPENVSLKGPGGVVWNIGLTTRDDTLYFTHGWEQFVKDHSLKENDFLVFKYNGESLFDVLIFDGESFCEKAASYFVRKCGHAEHGGGCSSKRRDTDNSVDEVNTPSNGGVECVSPDKSAHLNSVQVPFAVPCETPNEKTYNGGVESACAEQFMGDAVPEQFVTEPVTDTEAVAVPVPSQTIGKRISRSVYAVKPVQHKRRGRPPKASNSRERALNWVTESETASGGKSGSGSPELYISNRRPVTENEIKNTLQMAQAACTNDSVHVTMRPSHVYKRFFVVNNCLSNLN. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03774 340 Gene3D - 21 120 IPR015300 -
Seca8g03774 340 SMART B3_2 27 117 IPR003340 GO:0003677
Seca8g03774 340 Pfam B3 DNA binding domain 37 115 IPR003340 GO:0003677
Seca8g03774 340 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 326 IPR044837 -
Seca8g03774 340 CDD B3_DNA 27 115 IPR003340 GO:0003677
Seca8g03774 340 MobiDBLite consensus disorder prediction 136 151 - -
Seca8g03774 340 MobiDBLite consensus disorder prediction 134 166 - -
Seca8g03774 340 SUPERFAMILY DNA-binding pseudobarrel domain 24 115 IPR015300 -
Seca8g03774 340 MobiDBLite consensus disorder prediction 263 289 - -
Seca8g03774 340 MobiDBLite consensus disorder prediction 246 289 - -
Seca8g03774 340 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03774 Seca-Chr8 108065040 108068584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03774 4 331 REM Transcription Factor Family AT4G33280 33.333 4.55e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g03774 B3 1.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03774 - - mtr:11414255 454.136