Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03771 ATGGCCTCTGTCTGTGAGGGAAAGTTAAATGTGAGAAGGCCTCACTTCTATGAGGTTTATTCCTCTGCCTCTAGCTCTGAGACACTGAAAATTCCAGATGCTTTCATCTGTAGAATGGAGGGCAGGACATACGGAATAGTTTTATTAACTGGTCCTAGTGGAAACACATGGCAAGTTCGATTAAGTAAGCAGGACAATGATATATTCTTCCATCATGGATGGCCAACATTTGTGGGAGATCATTGTTTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAGGGTAACTTGCATTTCACTGTGCAAGTATTTGATAAGAATGCATGCGAGAAAGAAGCAGCATTTCATTCTGAATGCAGTCAAAATTCGTGCAACTTTAATAATATTAAAGGACAGCAAAGTGATAGTAAGGAAAATTCTTCTTTGGATGTTGTTGAAGGTGTTCCAAAGAAAATGAGACATAGCACCATTGACAACCAGGAACTTGAGCTGGGAATTGTTGGAAAAGAACTATCAAAGTATGAGGTAGTTAAACCAATTAGCATGTTCAGAGAATCGGAAGAAACCTCCAACACCTTTCACATGGAAAATGACCATGAAGATCAAGACGCAGCCATCCTGTATCGAAGTGGGAAGGAAGATGAGCATTATAATCTTAGTGGAGTTTCACTATCAAAGTTATCAGCACATGATGAGAAAAAAGTTGCTCGGTCATTTACTTCGTCTTTTCCATATTTTGTTAGAATAATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGGTGGGTTGTTCACATGTTCTTTTTTTTTATTCAAAGTAA 822 0.382 MASVCEGKLNVRRPHFYEVYSSASSSETLKIPDAFICRMEGRTYGIVLLTGPSGNTWQVRLSKQDNDIFFHHGWPTFVGDHCLECGDLLVFRYEGNLHFTVQVFDKNACEKEAAFHSECSQNSCNFNNIKGQQSDSKENSSLDVVEGVPKKMRHSTIDNQELELGIVGKELSKYEVVKPISMFRESEETSNTFHMENDHEDQDAAILYRSGKEDEHYNLSGVSLSKLSAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLVGCSHVLFFYSK. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03771 273 CDD B3_DNA 21 105 IPR003340 GO:0003677
Seca8g03771 273 PANTHER B3 DOMAIN-CONTAINING 11 188 - -
Seca8g03771 273 SMART B3_2 16 107 IPR003340 GO:0003677
Seca8g03771 273 Gene3D - 8 109 IPR015300 -
Seca8g03771 273 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Seca8g03771 273 Pfam B3 DNA binding domain 21 107 IPR003340 GO:0003677
Seca8g03771 273 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03771 Seca-Chr8 107981261 107983200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03771 13 145 B3 DNA Binding Superfamily AT3G18990 33.582 1.84e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g03771 B3 2.3e-15 CL0405