Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03759 ATGCCTCTTTCTCGTAAACCGTTTTCTCCTTCGCCGTCGAATGGAACCAACCAAAACGACGGCGTTGCCAAAACCGGTAATTCTGTTCCGGCGCGGCGACTCACCAGACAGAGAAAGCTCCGGCACCTCAGTGACCAAGACATTGGCTTGTTGTATTCCTCTGGTTCGTCACCATCGTCTTCTTCTCCTTCGTTTCAAGGTTCACCTGAGCCATCTCTCAAGTCTCGCTCACTCGGCTGTTCCGACCACCGCTCTTCCTCTGCCGCGCCTCAACCGCTGCCGCTTCCCGAGTCCTCGTTGACCCGCCGAACCGGGTTAACCCGCCCCGATCTCTTTGCACACCGGAGCTTTCCTCTTCCGAGGAAGACAGAAGATCATGATGGAAAGGCAAATACAAAACCTTCACACAATTTGGGTAGATCCTCTTTAGATTCTAATCTTGCAAATTCTAAATATAATCTGAGAGTGCATATTCCAGCTGCAAGGTTCATGACAGGTTTTATGCCTCGAGAATTGAATATTGGACATCATTTAACTTCTTATGTTGCAGTTGTTAATGCAGGCAATAGTTCTTATAAAGACCCTAGAACTGTCTCTCATGATAATGACTCTGAAAGTATTCCCAACTTGAGCTTGGGTGTTGCTGCCAAGAGTGCCCCAACAAGTGCAGTCACCACTCCTGTTACTAGTCCACGTAGATCAAGCAATGTGGATTTCCTTGATCCTACTGTCAATTTTCCTTTAGAAGTTAATGACAATATGAAAATGTTACCAGCTAAAACTGTTCATAGTCCAGACCATTCTCCTCCTCATTGCCCACTGAGCCTTACTCGTTTCATTAATCCAAAAACTCAAGAGGGATCTCAGCACCCTAAATTTTTGTCCAATATGTGGCCTGAAAATAACCATGTTGATGCACATCCATTACCCCTTCCACTTAGAGCTTCACCACCAGCACAATTACCTATGCTGCATCAACCAAGCACCATGCCTCATGCAATGGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACCTTTGGGAGTGTTTTTCATGCAACCAACTTAGAGACTGGAGCCTCATGTGCAATGAAGGAGGTGGATCTAATTCCAGATGATCCTACATCTGCTGAATGCATGAAGCAGCTAGAGCAGGAAATCAGAATTCTCCGTCAACTACGCCATCCCAATATTGTGCAGTACTATGGAAGTGAAATAGTTGGCAATCATTTGTACATATATATGGAGTATGTCCATCCTGGATCAATTAACAAATTTATTCATGAACATTGTGAAGCTATGACAGAATCTGTGGTTCGCAATTTTACAAGGCATCTTCTCTCTGGATTGGCTTACTTACACAGTACCAAAACTATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTTAATGAATCAGGCATTGTCAAGCTTGCTGATTTTGGGATGGCAAAAATTTTGACAGGGAATTCATGTGAACTTTCTTTGAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCATGAAAGCCACCACAAAAAATGAATCCAATCCTGACCTTGTCATGGCCATTGATATATGGAGCTTAGGGTGCACCATCATTGAAATGCTGACAGGCAAACCTCCTTGGGGTGAATTTGAAGGGCCTTCAGCCATGTTCAAGGTACTGCAACAGTCCCCGCCTATACCGGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTTTTCAAAGGGACCCTGCAGATCGACCATCTGCAGAGATGCTTCTTAAACATGCCTTCGTGCAGAATTTGCATGATCAAGATCTTCTAGTTCATCCTCCTATTGGAGACCCAGGATCAAGAGATGATTCTCCTAGTCCGAGTGAAACTACCAAAAATAGACGTCACACAATGCCATCATCCATGAGTGCACGGATTTTTAACAAAATTCAGAAACTCATCAGTGACACTTCCCAACAAAATACTACTGAGGAATCTAACCACATCATACCTTATCGTCACTCTCAAGTTCCAGAAGTTAACATTCTTCAGTCTTCCTTCAAACCCGATACCCTCAATTACATTTCTGTTGCAAATAACAGCAACATACCCCTCACTGTCATGAGAATGATCACGCACCTTTAA 2157 0.4404 MPLSRKPFSPSPSNGTNQNDGVAKTGNSVPARRLTRQRKLRHLSDQDIGLLYSSGSSPSSSSPSFQGSPEPSLKSRSLGCSDHRSSSAAPQPLPLPESSLTRRTGLTRPDLFAHRSFPLPRKTEDHDGKANTKPSHNLGRSSLDSNLANSKYNLRVHIPAARFMTGFMPRELNIGHHLTSYVAVVNAGNSSYKDPRTVSHDNDSESIPNLSLGVAAKSAPTSAVTTPVTSPRRSSNVDFLDPTVNFPLEVNDNMKMLPAKTVHSPDHSPPHCPLSLTRFINPKTQEGSQHPKFLSNMWPENNHVDAHPLPLPLRASPPAQLPMLHQPSTMPHAMENLPSVKGRWQKGKLIGRGTFGSVFHATNLETGASCAMKEVDLIPDDPTSAECMKQLEQEIRILRQLRHPNIVQYYGSEIVGNHLYIYMEYVHPGSINKFIHEHCEAMTESVVRNFTRHLLSGLAYLHSTKTIHRDIKGANLLVNESGIVKLADFGMAKILTGNSCELSLKGSPYWMAPEVMKATTKNESNPDLVMAIDIWSLGCTIIEMLTGKPPWGEFEGPSAMFKVLQQSPPIPETLSSVGKDFLQQCFQRDPADRPSAEMLLKHAFVQNLHDQDLLVHPPIGDPGSRDDSPSPSETTKNRRHTMPSSMSARIFNKIQKLISDTSQQNTTEESNHIIPYRHSQVPEVNILQSSFKPDTLNYISVANNSNIPLTVMRMITHL. 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03759 718 MobiDBLite consensus disorder prediction 627 645 - -
Seca8g03759 718 Gene3D Transferase(Phosphotransferase) domain 1 341 640 - -
Seca8g03759 718 MobiDBLite consensus disorder prediction 115 133 - -
Seca8g03759 718 SUPERFAMILY Protein kinase-like (PK-like) 321 644 IPR011009 -
Seca8g03759 718 MobiDBLite consensus disorder prediction 613 645 - -
Seca8g03759 718 MobiDBLite consensus disorder prediction 8 25 - -
Seca8g03759 718 SMART serkin_6 344 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03759 718 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Seca8g03759 718 FunFam Mitogen-activated protein kinase kinase kinase 5 341 641 - -
Seca8g03759 718 MobiDBLite consensus disorder prediction 49 105 - -
Seca8g03759 718 MobiDBLite consensus disorder prediction 1 145 - -
Seca8g03759 718 Pfam Protein kinase domain 345 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03759 718 ProSiteProfiles Protein kinase domain profile. 344 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03759 718 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 60 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03759 Seca-Chr8 107700378 107706277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03759 300 608 MAP Kinase Kinase Kinase AT1G63700 52.201 2.99e-99 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca8g03759 Pkinase 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03759 - - gmx:100819530 882.478