Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03755 ATGGAAGCAATGAATAGGAGCTCCTCTTCCACTTCTTCTTCGTATTCTTCCACTTCAGATCAGTCCACCCCACGCAGTAATAATAACAACCCCAACAAACCCGTGAGGATCAAAGGCCCATGGAGTGCAGAAGAAGACCGGATCCTGACCCGACTCGTCGAAACCCACGGGCCCCGAAACTGGTCCTTGATTAGCCGTTATATAAAGGGAAGGTCCGGCAAGTCTTGCAGGCTTCGGTGGTGCAATCAGCTAAGTCCCACCGTGGAGCACCGACCGTTCTCGCCGGAAGAGGACAACATAATCTTGGACGCTCATGCCCGGTTCGGTAATAAGTGGGCCACCATTGCCCGGTTATTACCGGGTCGAACCGATAATGCGGTTAAGAATCATTGGAATTCGACTCTCAAGAGGAGGGACCAACGGCGTCGTTTTGTTAACGATTTCGGGGATGCTGCTGCTGTTTCTTCTCCTGGATCTGTGCCGTTGGAGGATGATCCATTGACCACGTTGACCCTGGCGCCGCCCGGGAATGGTAACGGCGTCGGAGAGGAGAAAAGGCTTTCGCCGGAGAGTGTGCCGGCGGGGTTTTGGGATGCGATGCGAGGTGTGGTTGCGAGGGAAGTGAGAGAATATATGTCTTCCACGTTTTCTGACAACTTGGGTTCGCATTGA 672 0.5342 MEAMNRSSSSTSSSYSSTSDQSTPRSNNNNPNKPVRIKGPWSAEEDRILTRLVETHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPEEDNIILDAHARFGNKWATIARLLPGRTDNAVKNHWNSTLKRRDQRRRFVNDFGDAAAVSSPGSVPLEDDPLTTLTLAPPGNGNGVGEEKRLSPESVPAGFWDAMRGVVAREVREYMSSTFSDNLGSH. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03755 223 PANTHER MYB PROTEIN-RELATED 38 161 - -
Seca8g03755 223 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Seca8g03755 223 Gene3D - 92 138 - -
Seca8g03755 223 MobiDBLite consensus disorder prediction 155 190 - -
Seca8g03755 223 MobiDBLite consensus disorder prediction 1 41 - -
Seca8g03755 223 Gene3D - 37 89 - -
Seca8g03755 223 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Seca8g03755 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Seca8g03755 223 FunFam MYB transcription factor 38 89 - -
Seca8g03755 223 CDD SANT 92 135 IPR001005 -
Seca8g03755 223 Pfam Myb-like DNA-binding domain 41 98 - -
Seca8g03755 223 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Seca8g03755 223 CDD SANT 40 82 IPR001005 -
Seca8g03755 223 SMART sant 89 137 IPR001005 -
Seca8g03755 223 SMART sant 37 86 IPR001005 -
Seca8g03755 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Seca8g03755 223 MobiDBLite consensus disorder prediction 1 35 - -
Seca8g03755 223 FunFam Transcription factor MYB44 92 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03755 Seca-Chr8 107644228 107644899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03755 36 149 MYB Transcription Factor Family AT4G37260 75.439 6.28e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g03755 Myb_DNA-bind_6 6.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03755 - - zju:107420865 277.33