Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03750 ATGCAAGAGAAAGATAATAAGAGTAACGAGGGTGATGGTGAAAATAACTTGAAATCCAGTAATGAAGTCACTGTTTTCTCTGATGAGGTTGTTCCTGATGTTTATAAAAGGATTTCTGAGTTAAGTGGTGATGATATTAGATTGCTTGAGTTTGATTCTCTTCAGGATGCATATGATTTCTATAGTGAATATGCGAAATTTAAAAGGTTTGTTGTTAGGAAAGATGATGTACACTGTGATCGTAATAAGGATATTACAATGAGGCAATTGGTATGTAATAGGCAGGGGGAAAGGAGTGAGAAGCATTTGAATAGGACAGATAGAATTAGGGAAGCTAAGGCCATTACTAGTACTAATTGTCTTGCGAGGATTCGATTGTATCTGGACAAAGATAGTAGCAAGTGGAGGGTTGGAAAGTTTGAGCCAGATCACAATCATGAACTAACTCCTGCAACTATGGTACATTTGTTACCAAAATATCGTGGTTTGAGTGTTGCTAATAAGGCACAAGTAAACAGTCTTCACTTATACGGTGTAAGGACTTGTCATATAATGGGGCTAATTATGGGTCATAAGGGTGGTCATTCAGACCTTGGATTTTGTAAGAAGGACCTATACAATCACATTGGCAAGGGGAATAGGGCCAAAATAGAGGATGGGGATGCTTTTGCTGCCTTGTGCTATCTTCAAGCAAAACCTTTAGTAATTTTTTGTGGTTATAACCATCATGGTGAAATCACTATCTTTGGTTGTGCTCTTGTTGCGGATGAGAAGACAGAAACATATAAATGGGTGCTTGAAACTTTTCTGGAAGCCATGTTCAATAAAGTACCTAAGGCAGTTGTTACTGATGGGGATGGTGCCATGCGTGAAGCTGTTAGGACTGTTTTTCCAGGTTCTCTTCACAGGCTATGTTCATGGCACCTTCACCAAAATGCTTGTGAGAACGTAAAAAATCTGAAATTTCTTGAAGATTTTAAGATGTTATTATATTCCAATTTTACTCCTGAGAGGTTTGAGGAAGAATGGTTGAAGGTTATTGAGAAACATGGTTTGAACAATAATAAATGGGTTAGGAAAGTGTATGACTTGAGGAGGATGTGGGCTACTGCTTATTTCAGGGACAATTTTTTTGGTGGAATCAGGACTACCTCTATTTGTGAAGGTATTAATTCATTCATTAAGAGATATGTTCAGAGTAAAAACAGTCTTGTTGATTTTCTTCACAATTTTGAGAGAGCTCTGAATGAATATAGACATAATGAGTTAGCTTCTGATTACAAGTCTACATACACCCAACCTGTTTTGACAACTGCTTTGGAAAAGTCAGAGGTAGGTAATATTATCACAATGAAGATGAATAAGTTTGGAGGTCCTAATTCTTTATATGTTGTAATTTATGATAAGTCTGTTGATGGTGACACATCAAAAAAAGAAGTGTTGAGGTCTGGTGTTGTAGGTGCAGCCCGTAACAGGCTTAACAAGGCTGCACATAAAAATCCTCATAATTTTGTGAAAAACATTGAGGCTATCCATCATTTGGCAGATCAAATGGAAAGGCAAGATGGTGTTGATCTGAATATTGCTAACATATCAAGGGTTGTTCGCGATCCAACAATTGTCAAAAGTAAAGGTGCACCTCGTAAGAGTAAGAAAATGATGAAGAAAAGGAAATGTTATTATTGTAAGCGTCCAGGTCACACAGTCAGGACATGCTCCAAGTTCTCAACTCCAGATCAATTGCAAACCGTTGAAGAAGAGGAATCTTCTGTTAAGAGTGATGGAGACTCACGTGATGTAACCGGCACTTATAATAATGAATCTTTAAACCATAGCAAAGGTGTAACTCATTTTGTACATGGTAAAAGTTCATCAGGACAGGTTCAGAAATCTAATAAGAAGGCTAAACATGATGATATTGTGAAATTAACTCAGGAGTCAGTAAATGACAGACACTGTTGCGATGGTACAAATGCTCATTTCACACAGATGCACAATGATCAAAGGTTCTCAGGAATGTATCAATATCAACCATCTATGATACAAAATTTTGGTCAAGTTCAGTTTAATAGCAGAGTACATGTGATGCCCCAGTACCCTCATATACCCATCCAACATCCATTTCATAACTCCACAGGTTATCATGGAATGAATACATTTGCAAGTCATTCACAGCATTTTACAACTGCACTGAACGAGGTGGAGAGCAAAGCTGGTCTAAGCAGGAAGTGTTTCAATCCAAGAGATAGCAGAATATAG 2259 0.3754 MQEKDNKSNEGDGENNLKSSNEVTVFSDEVVPDVYKRISELSGDDIRLLEFDSLQDAYDFYSEYAKFKRFVVRKDDVHCDRNKDITMRQLVCNRQGERSEKHLNRTDRIREAKAITSTNCLARIRLYLDKDSSKWRVGKFEPDHNHELTPATMVHLLPKYRGLSVANKAQVNSLHLYGVRTCHIMGLIMGHKGGHSDLGFCKKDLYNHIGKGNRAKIEDGDAFAALCYLQAKPLVIFCGYNHHGEITIFGCALVADEKTETYKWVLETFLEAMFNKVPKAVVTDGDGAMREAVRTVFPGSLHRLCSWHLHQNACENVKNLKFLEDFKMLLYSNFTPERFEEEWLKVIEKHGLNNNKWVRKVYDLRRMWATAYFRDNFFGGIRTTSICEGINSFIKRYVQSKNSLVDFLHNFERALNEYRHNELASDYKSTYTQPVLTTALEKSEVGNIITMKMNKFGGPNSLYVVIYDKSVDGDTSKKEVLRSGVVGAARNRLNKAAHKNPHNFVKNIEAIHHLADQMERQDGVDLNIANISRVVRDPTIVKSKGAPRKSKKMMKKRKCYYCKRPGHTVRTCSKFSTPDQLQTVEEEESSVKSDGDSRDVTGTYNNESLNHSKGVTHFVHGKSSSGQVQKSNKKAKHDDIVKLTQESVNDRHCCDGTNAHFTQMHNDQRFSGMYQYQPSMIQNFGQVQFNSRVHVMPQYPHIPIQHPFHNSTGYHGMNTFASHSQHFTTALNEVESKAGLSRKCFNPRDSRI. 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03750 752 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g03750 752 Gene3D - 537 584 - -
Seca8g03750 752 Pfam MULE transposase domain 233 312 IPR018289 -
Seca8g03750 752 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
Seca8g03750 752 MobiDBLite consensus disorder prediction 596 630 - -
Seca8g03750 752 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 439 IPR031052 GO:0006355
Seca8g03750 752 MobiDBLite consensus disorder prediction 576 637 - -
Seca8g03750 752 SUPERFAMILY Retrovirus zinc finger-like domains 545 575 IPR036875 GO:0003676|GO:0008270
Seca8g03750 752 ProSiteProfiles Zinc finger CCHC-type profile. 557 574 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03750 Seca-Chr8 107567248 107570401 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g03750 FAR1 1.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03750 - - tpra:123910662 520.39