Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03744 ATGCAACAATCAAACGGTTCTGATTCATCGCAACAGCAACAGCAACACTCGTCGGAGCAGAACAAACAACAACGCCAACCGCCGCCGCCGCAGGCTCAGCCAGTGGCGGTGCCGCCTCAGTGGGTGCCGATGCAGTATCCGGCGGCGGCGATGGTAATGCCGCACCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCTTACGTGCCTTACCACCACCAGTATCAGCAGCTACCACCGCACGTGCCACATCAGCATCAGCATCAACACCAGCATGGATCCAACGGCGAGAACAAGACTATTTGGGTCGGTGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTTATTCACATGCCACAGCTGAGAAAGTTTTGCAGAATTATCCTGGAATGGTGATGCCCAACACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACGGGAGACAAGAATTCAGATAATGCTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGTTTGTTGCATGAAACTTTTGCTAGTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGATATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGATCCCAGGCCATGACTCATATGAATGGTGTTTACTGTTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGAGGCCAGTCAAATGGCGCATCCGGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTCACAGATGAAGATCTTAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCCGTAGGTAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGGAGAAGCTAAATGGGACAATGATTGGCAAGCAAACAATTCGTCTTTCTTGGGGCCGCAATCCTGCAAATAAGCAGTTTAGAATGGATTTTGGCAACCCCTGGAGTGGGGCTTATTATGGTGGCCCTATTTATGATGGTTATGGATATGCAATGCCGCCTCCTAATGACCCAAGCATGTATGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGCCACCAACAGCAAGTAAACTGA 1284 0.4759 MQQSNGSDSSQQQQQHSSEQNKQQRQPPPPQAQPVAVPPQWVPMQYPAAAMVMPHHMLPPQHYAPPPYVPYHHQYQQLPPHVPHQHQHQHQHGSNGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYPGMVMPNTEQPFRLNWATFSTGDKNSDNAPDLSIFVGDLAADVTDSLLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTHMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGASGQSEADSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALEKLNGTMIGKQTIRLSWGRNPANKQFRMDFGNPWSGAYYGGPIYDGYGYAMPPPNDPSMYAAAYGAYPVYGGHQQQVN. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03744 427 MobiDBLite consensus disorder prediction 1 37 - -
Seca8g03744 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 363 IPR000504 GO:0003723
Seca8g03744 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 263 IPR000504 GO:0003723
Seca8g03744 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Seca8g03744 427 Gene3D - 290 399 IPR012677 -
Seca8g03744 427 Gene3D - 180 289 IPR012677 -
Seca8g03744 427 FunFam Polyadenylate-binding protein RBP47C isoform A 191 267 - -
Seca8g03744 427 SUPERFAMILY RNA-binding domain, RBD 289 397 IPR035979 GO:0003676
Seca8g03744 427 CDD RRM1_SECp43_like 100 180 - -
Seca8g03744 427 CDD RRM2_SECp43_like 191 270 - -
Seca8g03744 427 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Seca8g03744 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 369 IPR000504 GO:0003723
Seca8g03744 427 Gene3D - 98 178 IPR012677 -
Seca8g03744 427 SMART rrm1_1 100 175 IPR000504 GO:0003723
Seca8g03744 427 SMART rrm1_1 193 267 IPR000504 GO:0003723
Seca8g03744 427 SMART rrm1_1 298 365 IPR000504 GO:0003723
Seca8g03744 427 SUPERFAMILY RNA-binding domain, RBD 175 288 IPR035979 GO:0003676
Seca8g03744 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 88 373 - -
Seca8g03744 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Seca8g03744 427 MobiDBLite consensus disorder prediction 1 26 - -
Seca8g03744 427 MobiDBLite consensus disorder prediction 272 303 - -
Seca8g03744 427 FunFam Polyadenylate-binding protein RBP47 282 399 - -
Seca8g03744 427 SUPERFAMILY RNA-binding domain, RBD 63 180 IPR035979 GO:0003676
Seca8g03744 427 CDD RRM3_NGR1_NAM8_like 296 367 - -
Seca8g03744 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Seca8g03744 427 MobiDBLite consensus disorder prediction 267 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03744 Seca-Chr8 107374023 107378525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03744 68 377 Eukaryotic Initiation Factors Gene Family AT4G34110 28.481 7.81e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03744 - - gmx:100819523 655.981