Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03685 ATGGACGGTTACGATGGGACCGTGAGGCTTGGTGCTATTAACTTGAAGCATGATCGCGGTGATTTTGACTCCGGTCCCGATGTATCGGTTTCCTCTCCGGTTACCAGACAGAAAGCCGCTGCTGCTAAGCAATTCATCGAGAATCATTACAAGAATTATCTTCAAGGATTGCAGGATCGCAAAGACAGACGCCGAGCACTTCAAAGGAAAGTGCAGGAATCTCAAATACCAGCTGAAGAGCAAGAGGAGATGATGAGGAATTTGGAGCGCCGAGAAACTGAATACATGAGGCTTCAGAGACGTAAAATTGGAATTGACGATTTCGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTGGAACATGTAAGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATCATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAACACAACTATGTACATAGGGATATAAAACCAGATAACCTGATTCTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCAACAATTCTATTGGAAAATGAAGATTTTAGCGGTCAAGAATCAACTAGTGAAACTGAAGGATATTCTACCTCCCCTTGGTTGATGCCAAAGGAACTATTACAACAGTGGAAACGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGACCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCTGAAGAACCCAAAATATCAGTTGAAGCTAAGGATCTGATCTGTCGCTTACTATGTGATGTTGACTCAAGACTAGGAACCAGAGGAGTAGAAGAAATAAAGGCCCATCCATGGTTCAAGAGTATTCAGTGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTACAGTCACTGGAGACTTGGACACGCAAAACTTTGAGAAGTTTCCTGATGTGGACGGCCCACCATCCTCAACAGCAAGTGTGGGACCTTGGCGAAAGGTAATTATTTTTTTAAGCTTTTAA 1395 0.4158 MDGYDGTVRLGAINLKHDRGDFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPAEEQEEMMRNLERRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDFSGQESTSETEGYSTSPWLMPKELLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMTCRKIVNWKTCLKFPEEPKISVEAKDLICRLLCDVDSRLGTRGVEEIKAHPWFKSIQWDMLYELEAAYKPTVTGDLDTQNFEKFPDVDGPPSSTASVGPWRKVIIFLSF. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03685 464 CDD STKc_NDR_like 106 459 - -
Seca8g03685 464 CDD MobB_NDR_LATS-like 42 103 - -
Seca8g03685 464 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Seca8g03685 464 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03685 464 SUPERFAMILY Protein kinase-like (PK-like) 83 453 IPR011009 -
Seca8g03685 464 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Seca8g03685 464 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 464 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca8g03685 464 Coils Coil 78 101 - -
Seca8g03685 464 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Seca8g03685 464 Gene3D Transferase(Phosphotransferase) domain 1 194 425 - -
Seca8g03685 464 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Seca8g03685 464 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 437 - -
Seca8g03685 464 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03685 464 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Seca8g03685 464 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g03685 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03685 Seca-Chr8 106212514 106220653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03685 1 459 AGC Kinase Gene Family AT5G09890 80.260 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca8g03685 Pkinase 7.7e-65 CL0016