Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03681 ATGTTAATGAGGATGCAGAATCTCCCTGAATTCTCTGCACCTCACGGAAACGGCACGGTGGCGAGTTTTCAACAACCAGAGTTCTCTGTTGCAAACACCATGCCATTTGCAAATTCAATTGAGAACCTTCATACTCCTATTCCTTGGTCTTCATTCACTCACACGCCTGCATCAACCTCAATCTCTTTCGCTAATAACACTGCTATGATGAATTCATCCAACGGTGATGCATTATCTGGTGCAAACGGTTATTCAGGGAAACGCAATTCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCATCCATGCAACCGATTCACATAGATTATGAATCCGTGAAGGCACCGAAGCGGAGGAACGTGAAGATTTCGAAGGATCCTCAGAGCGTTGCAGCTAGGCACAGGAGAGAAAGGATCAGTGAGAGGATAAGGATACTGCAGAGAATGGTCCCTGGAGGGACTAAGATGGACACTGCTTCTATGTTAGATGAAGCCATTCACTACCTAAAGTTTCTCAAGACACAGGTTCAATCACTTGAACGAGTTGCTGCTGCTAATAACAGGATTGGATTCCCTGTGTCTGTGTCTAATGAAAGTGCTAGCACTAGCACCACCAGCACCCCTTATCTTCCACTTCCAAAACCTTAA 651 0.4562 MLMRMQNLPEFSAPHGNGTVASFQQPEFSVANTMPFANSIENLHTPIPWSSFTHTPASTSISFANNTAMMNSSNGDALSGANGYSGKRNSMAAMREMIFRIASMQPIHIDYESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRMVPGGTKMDTASMLDEAIHYLKFLKTQVQSLERVAAANNRIGFPVSVSNESASTSTTSTPYLPLPKP. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03681 216 FunFam BHLH transcription factor 127 191 - -
Seca8g03681 216 Gene3D - 123 190 IPR036638 GO:0046983
Seca8g03681 216 Pfam Helix-loop-helix DNA-binding domain 133 173 IPR011598 GO:0046983
Seca8g03681 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Seca8g03681 216 SMART finulus 130 179 IPR011598 GO:0046983
Seca8g03681 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 185 IPR036638 GO:0046983
Seca8g03681 216 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 201 IPR045843 GO:0003700|GO:0006355
Seca8g03681 216 MobiDBLite consensus disorder prediction 195 216 - -
Seca8g03681 216 MobiDBLite consensus disorder prediction 195 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03681 Seca-Chr8 106106850 106107500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03681 28 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 61.250 1.64e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g03681 HLH 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03681 - - gmx:100788158 226.868