Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03674 ATGATCCTCGACCATTCAGTGTTCTCTGGAATTGCGGATATTCATGACCGACACAGGGATATGCGAATTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGCATTGGAAATGTGAATACAGGATTGAGTGAGGAGAACATATTGAAACATTTGAAGCAGAAGAAGTATTCAGTTGAATCAGGATCTCAGCGTGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAATGATGGAGATGATATTGGATCATTGGATTGTGGACATGATTACCATACCGACTGTATTAAACAGTGGCTAGTGCATAAGAATCTGTGTCCCATTTGTAAAAGAACAGGGTTGGCAACATGA 366 0.4126 MILDHSVFSGIADIHDRHRDMRIDVDNMSYEELLALEERIGNVNTGLSEENILKHLKQKKYSVESGSQREAEPCCVCQEEYNDGDDIGSLDCGHDYHTDCIKQWLVHKNLCPICKRTGLAT. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03674 121 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 119 IPR045191 GO:0061630
Seca8g03674 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 118 IPR013083 -
Seca8g03674 121 ProSiteProfiles Zinc finger RING-type profile. 74 115 IPR001841 -
Seca8g03674 121 SUPERFAMILY RING/U-box 73 117 - -
Seca8g03674 121 Pfam Ring finger domain 74 115 IPR001841 -
Seca8g03674 121 SMART ring_2 74 114 IPR001841 -
Seca8g03674 121 FunFam E3 ubiquitin-protein ligase MBR2 42 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03674 Seca-Chr8 105915162 105916105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03674 1 121 C3H Transcription Factor Family AT2G15530 61.600 7.56e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03674 - - psat:127091144 217.238