Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03666 ATGGTTAGATTTTATGGGCTGAATAGAAAGCAGAGTGTTCTATTTTGCTACAAGGGTGGAAACCAATTCTATATTTTGGTGGGAAATCGTTTCGGGGTTGAAATTAAATACCCCCAAAAGCCAAGTGAGGTAGTGGAAATATCTTCAGATGATAGTGAAACTGACCATGAAGGTCATGTCAATTCTGTTGATGATGGAAGTGATCCTGAGGATTTCCCTTTCTGGACTATGACAATGTCCAAGTCATCTACTTCAGGAAGGAATGCTTTGCCTATTCCTGCAAAATTTGTCAGGGAGGGGCTTCTGCAAAGTCATTGGGTTTTGACTTTAAGACTTGACAACGGTGATCAGATTCTTTGCAAAATAATAAAAGGTTATAGGAGGCAGAATGAACGATATCTTGGTAGTGGTTGGTACAAGTTTTGCCATGACAAAAAATTCAAGGAGGGGGATATGCTGTTGATTTATTCAAATGGTGATCCTTAA 486 0.3909 MVRFYGLNRKQSVLFCYKGGNQFYILVGNRFGVEIKYPQKPSEVVEISSDDSETDHEGHVNSVDDGSDPEDFPFWTMTMSKSSTSGRNALPIPAKFVREGLLQSHWVLTLRLDNGDQILCKIIKGYRRQNERYLGSGWYKFCHDKKFKEGDMLLIYSNGDP. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03666 161 CDD B3_DNA 78 161 IPR003340 GO:0003677
Seca8g03666 161 Gene3D - 57 160 IPR015300 -
Seca8g03666 161 Pfam B3 DNA binding domain 77 156 IPR003340 GO:0003677
Seca8g03666 161 SUPERFAMILY DNA-binding pseudobarrel domain 71 159 IPR015300 -
Seca8g03666 161 ProSiteProfiles B3 DNA-binding domain profile. 75 161 IPR003340 GO:0003677
Seca8g03666 161 MobiDBLite consensus disorder prediction 46 67 - -
Seca8g03666 161 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03666 Seca-Chr8 105802731 105803630 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g03666 B3 1.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03666 - K19000 lja:Lj0g3v0086279.1 57.3806