Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03659 ATGGAAGAAAGGGATTATTGTTGTTCCACGAATACTTCAACTATCGGAAGATGCAGAAGCAACAGCCCAAAAGAGAAGACGAAGCAAGAGAAACCGATGAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTAGCAGAAATCAGAGAACCAAACAAGAGGTCAAGGATTTGGTTGGGATCTTACACCACTCCGGTGGCCGCCGCACGCGCCTATGACACGGCGGTGTTTTACCTGAGAGGCCCTTCAGCACGCCTCAACTTCCCTGAATTGTTGTTCCAAGACCAAGAAGCTGCTCACGATTCCATCATCCAACAAGGGAACATGTCTGCTGATTCCATACGCAAAAAAGCCACACAAGTTGGTGCTAGAGTTGATGCTCTCCAAACAGCTCTTCATGCTTCTTCCACTTCTCAGAAACCTGACTTGAATGAGTTTCCAAATCCCGAAGATTCCCTTGACCTTCAGGATTGA 483 0.4741 MEERDYCCSTNTSTIGRCRSNSPKEKTKQEKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDQEAAHDSIIQQGNMSADSIRKKATQVGARVDALQTALHASSTSQKPDLNEFPNPEDSLDLQD. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03659 160 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Seca8g03659 160 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Seca8g03659 160 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Seca8g03659 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 155 - -
Seca8g03659 160 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Seca8g03659 160 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Seca8g03659 160 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Seca8g03659 160 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Seca8g03659 160 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Seca8g03659 160 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Seca8g03659 160 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03659 Seca-Chr8 105472296 105472778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03659 29 155 AP2-EREBP Transcription Factor Family AT2G23340 54.422 8.41e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g03659 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03659 K09286 - gmx:547642 219.935