Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03651 ATGGAACTGAGCTTGGATTTGAGTTTGGATTTTGTCCCCAAAACCGTTTCCCTCTTTCTTGGCGACGTTTCTCGGAGCAGAGACAACTCTGAGAAACTTGCCATGCTTGAGGACTTTATCCAGAGATTGGAGGATGAGATGAGGAAGGTTGAGGCTTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTTGTAAACGATGCCATAGCAAGATTAAAGGAGGAAAAACTACGGTGTATTGGAATGCAAGATCCACCTGTAACTGAGGAAGAATTCATGCCGCTGAAGACCAATTATGGAGGAAATGGAAAAGGACCTTCAACCATGGAAAAAGAAAGTTGTGACAAGAAGAATTGGATGAGCTCAGTTCAGCTATGGAACACTGAAACCAAATTGGTAATTCTAAAATTTCATTATGTTTTTCAAAAGGGTGGAGAAAGTGTTCAACAACCGGATCAGAAGAACAATAGTGGAGGAGCATTTATCTCATTTGTCCCCAAAGAGGTTTCGAAAGTTCTGAGCTTTAGTTTGATGAGTCCAGCTTCTGAACTGAGCCATAGCAATTCCAAGAGTGGTTGTGGAGGTAGTAGTTCTGGCGCTTCTTTGCTTCGCGTTGAGATACAAAGTCAACCACAACCACCGCAACATCTGCAGCAGAATCCAAGGAAACAAAGGCGATGCTGGTCATCAGAGCATCATCGGCGTTTTGTTGACGCGCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTCACAAATGATGAAGTGAAAAGCCACTTGCAAAAGTACAGGCTTCATATTAGAAGATTCCCAGCTGACCAGACTAATAATGGCTTATGGATGGCACAAGATCAATGTGGAGATAAATCAAAGGGGAACCTATCACAGTCTGGTTCCCCACAAGGTCCTCTTACACCTCTTGTCTTGGGAGGGTCTGTTAAGGGTCTCTCAAGTCTTGTACTTCAGGTGCTTTCTGAGCAACTGTATGGTACTATAGGCATCGAGTATTTCTTATAA 1050 0.44 MELSLDLSLDFVPKTVSLFLGDVSRSRDNSEKLAMLEDFIQRLEDEMRKVEAFKRELPLCMLLVNDAIARLKEEKLRCIGMQDPPVTEEEFMPLKTNYGGNGKGPSTMEKESCDKKNWMSSVQLWNTETKLVILKFHYVFQKGGESVQQPDQKNNSGGAFISFVPKEVSKVLSFSLMSPASELSHSNSKSGCGGSSSGASLLRVEIQSQPQPPQHLQQNPRKQRRCWSSEHHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHIRRFPADQTNNGLWMAQDQCGDKSKGNLSQSGSPQGPLTPLVLGGSVKGLSSLVLQVLSEQLYGTIGIEYFL. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03651 349 MobiDBLite consensus disorder prediction 208 223 - -
Seca8g03651 349 MobiDBLite consensus disorder prediction 208 229 - -
Seca8g03651 349 MobiDBLite consensus disorder prediction 294 314 - -
Seca8g03651 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 317 IPR044787 GO:0003700|GO:0006355
Seca8g03651 349 SUPERFAMILY Homeodomain-like 220 280 IPR009057 -
Seca8g03651 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 279 IPR017930 -
Seca8g03651 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 222 277 IPR006447 GO:0003677
Seca8g03651 349 Gene3D - 221 278 - -
Seca8g03651 349 FunFam Myb family transcription factor 221 279 - -
Seca8g03651 349 Coils Coil 36 56 - -
Seca8g03651 349 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03651 Seca-Chr8 105194853 105197204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03651 1 272 G2-like Transcription Factor Family AT4G37180 40.357 2.85e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g03651 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03651 - - pvu:PHAVU_002G021400g 385.571