Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03647 ATGGCTGTGGAGCTTATAACGGGTTATCGTGGTGATAGCTTTGCAACAAGAAGTAGTGTGAGGGATGACAATGCCATTGCCGTACAAGAAGCAGCTTCTGCTGGTATTCATAGCGTGGAGAAGCTCATGAACATGATTTCAGAACAGAATAAGCAGAAGAATAATAATGAAGATGGTTCTTCTTCTGAATTTGAAGCTGTTGCTGATGTGGCTGTGAATAGATTCAAAGAGGTTATTTCTCTTCTCGATAGACCAAGAACCGGTCACGCTCGTTTCAGAAGGGCTCCTCCAACTGTGCCACCTGTTCCTCTTCTTCAATTGCAGCAAACAGTGGATTCAAAACCCAAAGTTCTTCAGACACAACAGAACAAAACAGAACAAGTCTCTGCTTTTAAGGTTTATTGCCCTACACCGGTTCTACGTCCCCCTCCTTTTCCGCTACCTCAGCAGCCAGAGAAGAATGAAGCAAATGGTTCTATCAAATTTTCAGCTTCACCATCAGTTTCTGCTGCTAACTCCTATATCTCTACGCTAACAGGGGACAGTGAAAGTTTGCAACAACGACCCTGTCGTTCTTCAGGGTTCCAAATCACTCACGTTTCTTCTTTTATGCGTAAACCACCACTATCTTCAACTTCTATGAAGAGGAAGTGCAATTCCATGGACTTTCCTGCTATCAAGTGTGGATCATCCTCTGCCCAGTGCCATTGCTCTAAGAAAAGCAGGAAATTGAAGTTGAAGAGAGTGATTAGAGTGCCAGCTATTAGTTCTAAAACTGCTGATATCCCACCTGATGAGTATTCATGGAGAAAATATGGACAGAAACCCATTAAGGGCTCTCCTCATCCAAGGGGTTATTACAAGTGCACTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAGCGCGCTGTGGATGATTCTAACATGCTTATTGTCACCTACGAAGGAGATCATAATCACACAAACACTGCTTCTGAGGTGGCTAATGCTGTTGTCGTTGAATCATCTTGA 1014 0.4398 MAVELITGYRGDSFATRSSVRDDNAIAVQEAASAGIHSVEKLMNMISEQNKQKNNNEDGSSSEFEAVADVAVNRFKEVISLLDRPRTGHARFRRAPPTVPPVPLLQLQQTVDSKPKVLQTQQNKTEQVSAFKVYCPTPVLRPPPFPLPQQPEKNEANGSIKFSASPSVSAANSYISTLTGDSESLQQRPCRSSGFQITHVSSFMRKPPLSSTSMKRKCNSMDFPAIKCGSSSAQCHCSKKSRKLKLKRVIRVPAISSKTADIPPDEYSWRKYGQKPIKGSPHPRGYYKCTSVRGCPARKHVERAVDDSNMLIVTYEGDHNHTNTASEVANAVVVESS. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03647 337 Pfam Plant zinc cluster domain 215 261 IPR018872 -
Seca8g03647 337 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03647 337 Pfam WRKY DNA -binding domain 265 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03647 337 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g03647 337 FunFam WRKY transcription factor 65 247 324 - -
Seca8g03647 337 Gene3D WRKY domain 247 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g03647 337 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 28 328 IPR044810 GO:0003700
Seca8g03647 337 SUPERFAMILY WRKY DNA-binding domain 259 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03647 Seca-Chr8 105104323 105106279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03647 27 284 WRKY Transcription Factor Family AT4G24240 48.966 5.64e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g03647 WRKY 8.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03647 - - lja:Lj0g3v0162929.1 449.899