Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03642 ATGGAAACCATTACAATACCATGTGTTGGTATGGAATTTGATGATGCAGAAAAAGCATGGGAGTTTTGGGTTGAATATGGTAAAAGAGCTGGCTTTGGAGTTAGAAAACTTTACTTAAACAAAAGGAAGAAAGATGGATTCATTAGATCATGTAGATTTGTTTGTTGTAAAGAGGGTTATCGAAAAACGGACAAGAGATCCTTTTTGGTTAAAAATCCCAGGGCTGAGACAAAAACTGGATGCGAAGCAAGAATTGGACTTTGCGAAAAGAATGGGAAGCTTGTAATCCACGAGTTCGTGGAGGCCCATAACCACCCTTTACAGCTTGCAGAAACAACACATATGCTAGCATCACACCATAAAATAACTAAGGTTCAAGCATATGAAATTGAAATGGCAGAGGACTCTGGATTGGCGCAAAAGGCTTCATTTCAGCTTATGAGTGCACATGCAGGAAATAGAGCTAACCTTGGATATACACGATTAGATGCCAAAAACTATCTCAAAGCAAGAAGACAACGCAATATGGTATATGGGGAAGCCGGTAGTCTTATGCAGTATTTTCAACGCCAACAATTGGAGAATCCATCATTTTACCATGCATATCAAATGGACTGTGATGAACAAATCACAAATGTATTTTGGGCTGATGCAAAAATGATTTTAGATTATTGA 675 0.3822 METITIPCVGMEFDDAEKAWEFWVEYGKRAGFGVRKLYLNKRKKDGFIRSCRFVCCKEGYRKTDKRSFLVKNPRAETKTGCEARIGLCEKNGKLVIHEFVEAHNHPLQLAETTHMLASHHKITKVQAYEIEMAEDSGLAQKASFQLMSAHAGNRANLGYTRLDAKNYLKARRQRNMVYGEAGSLMQYFQRQQLENPSFYHAYQMDCDEQITNVFWADAKMILDY. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03642 224 Pfam FAR1 DNA-binding domain 21 108 IPR004330 -
Seca8g03642 224 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03642 Seca-Chr8 104972871 104973545 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g03642 FAR1 2.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03642 - - tpra:123886591 341.658