Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03634 ATGGCGTCTGCAAGCAAAGACATGGATCGGATCAAGGGTCCTTGGAGCCCTGAAGAAGATGATGCGTTACAGAGGCTGGTTCAAATACACGGGCCGAGGAACTGGTCTTTGATCAGCAAATCCATTCCTGGTCGATCTGGGAAGTCGTGCCGTCTGCGGTGGTGCAACCAGCTGTCACCGCAGGTGGAGCACCGGCCATTCACGGCGGAGGAGGACAGCGCTATCATCAGAGCGCATGCCAGGTTCGGCAACAAATGGGCTACAATAGCTCGTCTTCTTAACGGTCGTACAGATAACGCCGTTAAGAATCACTGGAATTCCACCCTCAAGAGAAAATGCTCTGCCGTCACCGTCACAGCCGATCCCGACTCGTGTGATTACCAACCTCTCAAAAGATCCGCCAGTGTCGGTGCGGGTTATTTGAACCCGAGTAGCCCATCTGGATCCGATTTGAGCGATCCGGGTTTGCCCGCTATGTCCACTCCTTCAGCACATGCTAATGTTTTCAAACCCATTGCGAGGAGCGCAACGGTGATTCCCTCAACACACCTAATCGAAACTGCATCTTCAGACACCGATCCACCCACGTCGCTCACCTTATCGCTTCCCGGGTTTGAATCCTCCAACAACTGGTCCTGGTCCGGGTCGGGGTCGGGGTCGGGGTCCAAGCAGCCGATCCAGGCACGATCACCATCACCTCCGCCGCCGCCGCCGCCGACAGTGGCGGTGCAGAGCAGCGAGGAACGAGGGAAGCAGTTGTTCAACGCGGAGTTCTTAGCGGTGATGCAAGAAATGATAAGGAAGGAAGTGAGGAAATACATGTCTGGGATTGACCAGAATGGACTGTGTATGCAGACTGAAGCCATTGGAAACGCTGTGGTGAAACGCATGGGAATTAGCAACGTGAAGTAG 912 0.5471 MASASKDMDRIKGPWSPEEDDALQRLVQIHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTAEEDSAIIRAHARFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVTVTADPDSCDYQPLKRSASVGAGYLNPSSPSGSDLSDPGLPAMSTPSAHANVFKPIARSATVIPSTHLIETASSDTDPPTSLTLSLPGFESSNNWSWSGSGSGSGSKQPIQARSPSPPPPPPPTVAVQSSEERGKQLFNAEFLAVMQEMIRKEVRKYMSGIDQNGLCMQTEAIGNAVVKRMGISNVK. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03634 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Seca8g03634 303 FunFam Transcription factor MYB44 66 112 - -
Seca8g03634 303 SMART sant 11 60 IPR001005 -
Seca8g03634 303 SMART sant 63 111 IPR001005 -
Seca8g03634 303 MobiDBLite consensus disorder prediction 211 248 - -
Seca8g03634 303 FunFam MYB transcription factor 12 63 - -
Seca8g03634 303 CDD SANT 14 56 IPR001005 -
Seca8g03634 303 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Seca8g03634 303 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Seca8g03634 303 MobiDBLite consensus disorder prediction 137 159 - -
Seca8g03634 303 MobiDBLite consensus disorder prediction 228 242 - -
Seca8g03634 303 Gene3D - 11 63 - -
Seca8g03634 303 CDD SANT 66 109 IPR001005 -
Seca8g03634 303 PANTHER MYB PROTEIN-RELATED 12 222 - -
Seca8g03634 303 MobiDBLite consensus disorder prediction 211 227 - -
Seca8g03634 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Seca8g03634 303 MobiDBLite consensus disorder prediction 138 156 - -
Seca8g03634 303 Gene3D - 65 126 - -
Seca8g03634 303 Pfam Myb-like DNA-binding domain 15 73 - -
Seca8g03634 303 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03634 Seca-Chr8 104565133 104566044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03634 6 279 MYB Transcription Factor Family AT4G37260 52.145 2.18e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g03634 Myb_DNA-bind_6 9.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03634 K09422 - pop:7462860 377.867